import os

# Data Frame Columns
COUNT = "count"
CNT_DOWN = "cnt_down"  # Count of -1s present
CNT_GROUP = "cnt_group"  # Count of members in the same group
CNT_GENE = "cnt_gene"  # Number of genes
CNT_REGULATED = "cnt_regulated"  # Count of times up- down-regulated
CNT_TERM = "cnt_term"  # Number of GO terms"
CNT_UP = "cnt_up"  # Count of +1s present
CV = "cv"  # coefficient of variation
END = "End"  # Start position of gene
GENE_ID = "GENE_ID"  # Unique string for gene
GENE_IDS = "GENE_IDs"  # List of GENE_ID
GENE_NAME = "GENE_NAME"
GROUP = "group"
GO_LINK = "GO_Link"
GO_ONTOLOGY = "GO_Ontology"
GO_TERM = "GO_Term"
GROUP = "group"
HOURS = "hours"
INDEX = "index"
LENGTH = "Length"  # Length of gene in base pairs
MEAN = "mean"  # average value
PRODUCT = "PRODUCT"  # Transcript product
SAMPLE = "sample"  # Identity of a sample
TERM = "term"  # GO term
STAGE_NAME = "name"  # Name of the stage
STAGE_COLOR = "color"  # Color for the stage
START = "Start"  # Starting position of gene
STATE = "state"
STRAND = "Strand"  # either "+" or "-"
STD = "std"  # Standard deviation
TIMEPOINT = "timepoint"  # time in the experiment

# Paths

PROJECT_DIR = os.path.abspath(__file__)
for _ in range(4):
  PROJECT_DIR = os.path.dirname(PROJECT_DIR)
DATA_DIR = os.path.join(PROJECT_DIR, 'data')
CODE_DIR = PROJECT_DIR
for directory in ["xstate", "python"]:
  CODE_DIR = os.path.join(CODE_DIR, directory)
TEST_DIR = os.path.join(CODE_DIR, "tests")
DATA_PROVIDER_PERSISTER_PATH = os.path.join(
    os.path.dirname(os.path.abspath(__file__)),
    "data_provider.pcl")
SAMPLES_DIR = os.path.join(DATA_DIR, "samples")
ENSEMBLE_PATH = os.path.join(DATA_DIR, "ensemble.pcl")

# Data Characeristics
NUM_TIMES = 26
REF_TIME = 0  # Reference time

d4c0745eb77c4631347e51b988a93fb376fcedcf
<mask token>

<mask token>
for _ in range(4):
    PROJECT_DIR = os.path.dirname(PROJECT_DIR)
<mask token>
for directory in ['xstate', 'python']:
    CODE_DIR = os.path.join(CODE_DIR, directory)
<mask token>

<mask token>
COUNT = 'count'
CNT_DOWN = 'cnt_down'
CNT_GROUP = 'cnt_group'
CNT_GENE = 'cnt_gene'
CNT_REGULATED = 'cnt_regulated'
CNT_TERM = 'cnt_term'
CNT_UP = 'cnt_up'
CV = 'cv'
END = 'End'
GENE_ID = 'GENE_ID'
GENE_IDS = 'GENE_IDs'
GENE_NAME = 'GENE_NAME'
GROUP = 'group'
GO_LINK = 'GO_Link'
GO_ONTOLOGY = 'GO_Ontology'
GO_TERM = 'GO_Term'
GROUP = 'group'
HOURS = 'hours'
INDEX = 'index'
LENGTH = 'Length'
MEAN = 'mean'
PRODUCT = 'PRODUCT'
SAMPLE = 'sample'
TERM = 'term'
STAGE_NAME = 'name'
STAGE_COLOR = 'color'
START = 'Start'
STATE = 'state'
STRAND = 'Strand'
STD = 'std'
TIMEPOINT = 'timepoint'
PROJECT_DIR = os.path.abspath(__file__)
for _ in range(4):
    PROJECT_DIR = os.path.dirname(PROJECT_DIR)
DATA_DIR = os.path.join(PROJECT_DIR, 'data')
CODE_DIR = PROJECT_DIR
for directory in ['xstate', 'python']:
    CODE_DIR = os.path.join(CODE_DIR, directory)
TEST_DIR = os.path.join(CODE_DIR, 'tests')
DATA_PROVIDER_PERSISTER_PATH = os.path.join(os.path.dirname(os.path.abspath
    (__file__)), 'data_provider.pcl')
SAMPLES_DIR = os.path.join(DATA_DIR, 'samples')
ENSEMBLE_PATH = os.path.join(DATA_DIR, 'ensemble.pcl')
NUM_TIMES = 26
REF_TIME = 0

import os
COUNT = 'count'
CNT_DOWN = 'cnt_down'
CNT_GROUP = 'cnt_group'
CNT_GENE = 'cnt_gene'
CNT_REGULATED = 'cnt_regulated'
CNT_TERM = 'cnt_term'
CNT_UP = 'cnt_up'
CV = 'cv'
END = 'End'
GENE_ID = 'GENE_ID'
GENE_IDS = 'GENE_IDs'
GENE_NAME = 'GENE_NAME'
GROUP = 'group'
GO_LINK = 'GO_Link'
GO_ONTOLOGY = 'GO_Ontology'
GO_TERM = 'GO_Term'
GROUP = 'group'
HOURS = 'hours'
INDEX = 'index'
LENGTH = 'Length'
MEAN = 'mean'
PRODUCT = 'PRODUCT'
SAMPLE = 'sample'
TERM = 'term'
STAGE_NAME = 'name'
STAGE_COLOR = 'color'
START = 'Start'
STATE = 'state'
STRAND = 'Strand'
STD = 'std'
TIMEPOINT = 'timepoint'
PROJECT_DIR = os.path.abspath(__file__)
for _ in range(4):
    PROJECT_DIR = os.path.dirname(PROJECT_DIR)
DATA_DIR = os.path.join(PROJECT_DIR, 'data')
CODE_DIR = PROJECT_DIR
for directory in ['xstate', 'python']:
    CODE_DIR = os.path.join(CODE_DIR, directory)
TEST_DIR = os.path.join(CODE_DIR, 'tests')
DATA_PROVIDER_PERSISTER_PATH = os.path.join(os.path.dirname(os.path.abspath
    (__file__)), 'data_provider.pcl')
SAMPLES_DIR = os.path.join(DATA_DIR, 'samples')
ENSEMBLE_PATH = os.path.join(DATA_DIR, 'ensemble.pcl')
NUM_TIMES = 26
REF_TIME = 0

import os

# Data Frame Columns
COUNT = "count"
CNT_DOWN = "cnt_down"  # Count of -1s present
CNT_GROUP = "cnt_group"  # Count of members in the same group
CNT_GENE = "cnt_gene"  # Number of genes
CNT_REGULATED = "cnt_regulated"  # Count of times up- down-regulated
CNT_TERM = "cnt_term"  # Number of GO terms"
CNT_UP = "cnt_up"  # Count of +1s present
CV = "cv"  # coefficient of variation
END = "End"  # Start position of gene
GENE_ID = "GENE_ID"  # Unique string for gene
GENE_IDS = "GENE_IDs"  # List of GENE_ID
GENE_NAME = "GENE_NAME"
GROUP = "group"
GO_LINK = "GO_Link"
GO_ONTOLOGY = "GO_Ontology"
GO_TERM = "GO_Term"
GROUP = "group"
HOURS = "hours"
INDEX = "index"
LENGTH = "Length"  # Length of gene in base pairs
MEAN = "mean"  # average value
PRODUCT = "PRODUCT"  # Transcript product
SAMPLE = "sample"  # Identity of a sample
TERM = "term"  # GO term
STAGE_NAME = "name"  # Name of the stage
STAGE_COLOR = "color"  # Color for the stage
START = "Start"  # Starting position of gene
STATE = "state"
STRAND = "Strand"  # either "+" or "-"
STD = "std"  # Standard deviation
TIMEPOINT = "timepoint"  # time in the experiment

# Paths

PROJECT_DIR = os.path.abspath(__file__)
for _ in range(4):
  PROJECT_DIR = os.path.dirname(PROJECT_DIR)
DATA_DIR = os.path.join(PROJECT_DIR, 'data')
CODE_DIR = PROJECT_DIR
for directory in ["xstate", "python"]:
  CODE_DIR = os.path.join(CODE_DIR, directory)
TEST_DIR = os.path.join(CODE_DIR, "tests")
DATA_PROVIDER_PERSISTER_PATH = os.path.join(
    os.path.dirname(os.path.abspath(__file__)),
    "data_provider.pcl")
SAMPLES_DIR = os.path.join(DATA_DIR, "samples")
ENSEMBLE_PATH = os.path.join(DATA_DIR, "ensemble.pcl")

# Data Characeristics
NUM_TIMES = 26
REF_TIME = 0  # Reference time
