"""
    __author__: Kevin Chau
    __description: Quantify RNA-seq samples with Kallisto
"""

import os
import subprocess

def quantify(kallisto, fq_dir, transcriptome):
    """Quantify the passed FASTQ files using a subprocess call to Kallisto

        @param kallisto Path to kallisto executable
        @param fq_dir Directory of the FASTQ input files
        @param transcriptome Path to reference transcriptome
    """
    try:
        out = subprocess.check_output(
            [
                kallisto,
                "OTHER STUFF"
            ]
        )
    except subprocess.CalledProcessError as e:
        print(e)
        return(1)

    return(out)

if __name__ == '__main__':
    pass

7830f535d19a039aad8696202c3876231e1a2415
<mask token>

<mask token>


def quantify(kallisto, fq_dir, transcriptome):
    """Quantify the passed FASTQ files using a subprocess call to Kallisto

        @param kallisto Path to kallisto executable
        @param fq_dir Directory of the FASTQ input files
        @param transcriptome Path to reference transcriptome
    """
    try:
        out = subprocess.check_output([kallisto, 'OTHER STUFF'])
    except subprocess.CalledProcessError as e:
        print(e)
        return 1
    return out


<mask token>

<mask token>


def quantify(kallisto, fq_dir, transcriptome):
    """Quantify the passed FASTQ files using a subprocess call to Kallisto

        @param kallisto Path to kallisto executable
        @param fq_dir Directory of the FASTQ input files
        @param transcriptome Path to reference transcriptome
    """
    try:
        out = subprocess.check_output([kallisto, 'OTHER STUFF'])
    except subprocess.CalledProcessError as e:
        print(e)
        return 1
    return out


if __name__ == '__main__':
    pass

<mask token>
import os
import subprocess


def quantify(kallisto, fq_dir, transcriptome):
    """Quantify the passed FASTQ files using a subprocess call to Kallisto

        @param kallisto Path to kallisto executable
        @param fq_dir Directory of the FASTQ input files
        @param transcriptome Path to reference transcriptome
    """
    try:
        out = subprocess.check_output([kallisto, 'OTHER STUFF'])
    except subprocess.CalledProcessError as e:
        print(e)
        return 1
    return out


if __name__ == '__main__':
    pass

"""
    __author__: Kevin Chau
    __description: Quantify RNA-seq samples with Kallisto
"""

import os
import subprocess

def quantify(kallisto, fq_dir, transcriptome):
    """Quantify the passed FASTQ files using a subprocess call to Kallisto

        @param kallisto Path to kallisto executable
        @param fq_dir Directory of the FASTQ input files
        @param transcriptome Path to reference transcriptome
    """
    try:
        out = subprocess.check_output(
            [
                kallisto,
                "OTHER STUFF"
            ]
        )
    except subprocess.CalledProcessError as e:
        print(e)
        return(1)

    return(out)

if __name__ == '__main__':
    pass
