configfile: "Repos/iGenVar/test/benchmark/config/caller_comparison_config.yaml"

include: "workflow/rules/callers.smk"
include: "workflow/rules/eval.smk"
include: "workflow/rules/plots.smk"

ruleorder: create_empty_SVIM > reformat_truvari_results

##### Target rules #####

rule all:
    input:
        expand("results/caller_comparison_long_read/{dataset}_results.all.png",
               dataset=["MtSinai_PacBio","PacBio_CCS","10X_Genomics"])

ec84a5de771041d6ce0131b7fb615075c7f3e002
configfile: "Repos/iGenVar/test/benchmark/config/caller_comparison_config.yaml"

include: "workflow/rules/callers.smk"
include: "workflow/rules/eval.smk"
include: "workflow/rules/plots.smk"

ruleorder: create_empty_SVIM > reformat_truvari_results

##### Target rules #####

rule all:
    input:
        expand("results/caller_comparison_long_read/{dataset}_results.all.png",
               dataset=["MtSinai_PacBio","PacBio_CCS","10X_Genomics"])
