Add COMP6v2-wB97MV-def2TZVPP files
Browse files- README.md +55 -0
- co/co_0.parquet +3 -0
- ds.parquet +3 -0
README.md
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---
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configs:
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- config_name: default
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data_files: "co/*.parquet"
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- config_name: info
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data_files: "ds.parquet"
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license: cc-by-4.0
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tags:
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- molecular dynamics
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- mlip
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- interatomic potential
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pretty_name: COMP6v2-wB97MV-def2TZVPP
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---
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### <details><summary>Cite this dataset </summary>Huddleston, K., Zubatyuk, R., Smith, J., Roitberg, A., Isayev, O., Pickering, I., Devereux, C., and Barros, K. _COMP6v2-wB97MV-def2TZVPP_. ColabFit, 2024. https://doi.org/10.60732/e98b76e7</details>
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#### This dataset has been curated and formatted for the ColabFit Exchange
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#### This dataset is also available on the ColabFit Exchange:
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https://materials.colabfit.org/id/DS_m6etjqhlu40m_0
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#### Visit the ColabFit Exchange to search additional datasets by author, description, element content and more.
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https://materials.colabfit.org
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<br><hr>
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# Dataset Name
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COMP6v2-wB97MV-def2TZVPP
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### Description
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COMP6v2-wB97MV-def2TZVPP is the portion of COMP6v2 calculated at the wB97MV/def2TZVPP level of theory. COmprehensive Machine-learning Potential (COMP6) Benchmark Suite version 2.0 is an extension of the COMP6 benchmark found in the following repository: https://github.com/isayev/COMP6. COMP6v2 is a data set of density functional properties for molecules containing H, C, N, O, S, F, and Cl. It is available at the following levels of theory: wB97X/631Gd (data used to train model in the ANI-2x paper); wB97MD3BJ/def2TZVPP; wB97MV/def2TZVPP; B973c/def2mTZVP. The 6 subsets from COMP6 (ANI-MD, DrugBank, GDB07to09, GDB10to13 Tripeptides, and s66x8) are contained in each of the COMP6v2 datasets corresponding to the above levels of theory.
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### Dataset authors
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Kate Huddleston, Roman Zubatyuk, Justin Smith, Adrian Roitberg, Olexandr Isayev, Ignacio Pickering, Christian Devereux, Kipton Barros
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### Publication
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https://doi.org/10.1021/acs.jctc.0c00121
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### Original data link
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https://doi.org/10.5281/zenodo.10126157
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### License
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CC-BY-4.0
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### Number of unique molecular configurations
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156338
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### Number of atoms
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3786615
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### Elements included
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C, Cl, F, H, N, O, S
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### Properties included
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energy, cauchy stress
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<br>
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<hr>
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# Usage
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- `ds.parquet` : Aggregated dataset information.
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- `co/` directory: Configuration rows each include a structure, calculated properties, and metadata.
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- `cs/` directory : Configuration sets are subsets of configurations grouped by some common characteristic. If `cs/` does not exist, no configurations sets have been defined for this dataset.
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- `cs_co_map/` directory : The mapping of configurations to configuration sets (if defined).
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<br>
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#### ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:
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- [Parquet parsing: example code](https://materials.colabfit.org/docs/how_to_use_parquet)
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- [Dataset info schema](https://materials.colabfit.org/docs/dataset_schema)
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- [Configuration schema](https://materials.colabfit.org/docs/configuration_schema)
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- [Configuration set schema](https://materials.colabfit.org/docs/configuration_set_schema)
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- [Configuration set to configuration mapping schema](https://materials.colabfit.org/docs/cs_co_mapping_schema)
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co/co_0.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:86111820316e35f3ecf58b939449a98d2ea269161376b0a20af9dbd9dec32163
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size 208946544
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ds.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:b568443fb14dfc07bbf6f763d6987a9c18bf2a8b2605eba07ed3b0441341346d
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size 19531
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