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README.md
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---
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configs:
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- config_name: default
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data_files: "main/*.parquet"
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license: cc0-1.0
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tags:
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- molecular dynamics
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- mlip
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- interatomic potential
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pretty_name: MD22 AT AT CG CG
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---
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# Dataset
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MD22 AT AT CG CG
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### Description
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Dataset containing MD trajectories of AT-AT-CG-CG DNA base pairs from the MD22 benchmark set. MD22 represents a collection of datasets in a benchmark that can be considered an updated version of the MD17 benchmark datasets, including more challenges with respect to system size, flexibility and degree of non-locality. The datasets in MD22 include MD trajectories of the protein Ac-Ala3-NHMe; the lipid DHA (docosahexaenoic acid); the carbohydrate stachyose; nucleic acids AT-AT and AT-AT-CG-CG; and the buckyball catcher and double-walled nanotube supramolecules. Each of these is included here in a separate dataset, as represented on sgdml.org. Calculations were performed using FHI-aims and i-Pi software at the DFT-PBE+MBD level of theory. Trajectories were sampled at temperatures between 400-500 K at 1 fs resolution.
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<br>Additional details stored in dataset columns prepended with "dataset_".
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### Dataset authors
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Stefan Chmiela, Valentin Vassilev-Galindo, Oliver T. Unke, Adil Kabylda, Huziel E. Sauceda, Alexandre Tkatchenko, Klaus-Robert Müller
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### Publication
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https://doi.org/10.1126/sciadv.adf0873
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### Original data link
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http://sgdml.org/
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### License
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CC0-1.0
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### Number of unique molecular configurations
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10153
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### Number of atoms
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1198054
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### Elements included
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C, H, N, O
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### Properties included
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energy, atomic forces, cauchy stress
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### Cite this dataset
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Chmiela, S., Vassilev-Galindo, V., Unke, O. T., Kabylda, A., Sauceda, H. E., Tkatchenko, A., and Müller, K. _MD22 AT AT CG CG_. ColabFit, 2023. https://doi.org/10.60732/a87c6d4c
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