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- ---
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- configs:
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- - config_name: default
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- data_files: "main/*.parquet"
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- license: cc0-1.0
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- tags:
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- - molecular dynamics
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- - mlip
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- - interatomic potential
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- pretty_name: MD22 AT AT CG CG
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- ---
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- # Dataset
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- MD22 AT AT CG CG
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- ### Description
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- Dataset containing MD trajectories of AT-AT-CG-CG DNA base pairs from the MD22 benchmark set. MD22 represents a collection of datasets in a benchmark that can be considered an updated version of the MD17 benchmark datasets, including more challenges with respect to system size, flexibility and degree of non-locality. The datasets in MD22 include MD trajectories of the protein Ac-Ala3-NHMe; the lipid DHA (docosahexaenoic acid); the carbohydrate stachyose; nucleic acids AT-AT and AT-AT-CG-CG; and the buckyball catcher and double-walled nanotube supramolecules. Each of these is included here in a separate dataset, as represented on sgdml.org. Calculations were performed using FHI-aims and i-Pi software at the DFT-PBE+MBD level of theory. Trajectories were sampled at temperatures between 400-500 K at 1 fs resolution.
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- <br>Additional details stored in dataset columns prepended with "dataset_".
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- ### Dataset authors
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- Stefan Chmiela, Valentin Vassilev-Galindo, Oliver T. Unke, Adil Kabylda, Huziel E. Sauceda, Alexandre Tkatchenko, Klaus-Robert Müller
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- ### Publication
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- https://doi.org/10.1126/sciadv.adf0873
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- ### Original data link
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- http://sgdml.org/
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- ### License
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- CC0-1.0
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- ### Number of unique molecular configurations
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- 10153
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- ### Number of atoms
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- 1198054
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- ### Elements included
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- C, H, N, O
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- ### Properties included
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- energy, atomic forces, cauchy stress
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- ### Cite this dataset
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- Chmiela, S., Vassilev-Galindo, V., Unke, O. T., Kabylda, A., Sauceda, H. E., Tkatchenko, A., and Müller, K. _MD22 AT AT CG CG_. ColabFit, 2023. https://doi.org/10.60732/a87c6d4c