Extracting Clinical Concepts from User Queries
Table 1: Micro F1 scores of the two NER models two test sets.
['Model', 'Synthesized Queries', 'Clinical Notes']
With the above hyperparameter setting, the hybrid NER model achieved a F1 score of 0.995 on synthesized queries and 0.948 on clinical notes while the i2b2 NER model achieved a F1 score of 0.441 on synthesized queries and 0.927 on clinical notes