Enhancing Clinical Concept Extraction with Contextual Embeddings
Table 3: Test set comparison in exact F1 of embedding methods across tasks. SOTA: state-of-the-art.
['2.5  [BOLD] Method', '[BOLD] i2b2 2010 General', '[BOLD] i2b2 2010 MIMIC', '[BOLD] i2b2 2012 General', '[BOLD] i2b2 2012 MIMIC', '[BOLD] Semeval 2014 Task 7 General', '[BOLD] Semeval 2014 Task 7 MIMIC', '[BOLD] Semeval 2015 Task 14 General', '[BOLD] Semeval 2015 Task 14 MIMIC']
The performance is evaluated in exact matching F1. In general, embeddings pre-trained on the clinical corpus performed better than the same method pre-trained on an open domain corpus.