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+data/parc-ward100/sub-swedd3581/sub-swedd3581_desc-timeseries_parc-ward100.mat filter=lfs diff=lfs merge=lfs -text +data/parc-ward100/sub-swedd3582/sub-swedd3582_desc-timeseries_parc-ward100.mat filter=lfs diff=lfs merge=lfs -text +data/parc-ward100/sub-swedd3820/sub-swedd3820_desc-timeseries_parc-ward100.mat filter=lfs diff=lfs merge=lfs -text +data/parc-ward100/sub-swedd3821/sub-swedd3821_desc-timeseries_parc-ward100.mat filter=lfs diff=lfs merge=lfs -text +data/parc-ward100/sub-swedd3836/sub-swedd3836_desc-timeseries_parc-ward100.mat filter=lfs diff=lfs merge=lfs -text +data/parc-ward100/sub-swedd3871/sub-swedd3871_desc-timeseries_parc-ward100.mat filter=lfs diff=lfs merge=lfs -text diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 0000000000000000000000000000000000000000..04aabf19509b01442381fa3bf327e973ce9cbd5e --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,17 @@ +cff-version: 1.2.0 +message: "If you use this dataset, please cite it." +title: "PPMI Connectivity Graphs — Derivatives (HF Staging)" +version: "1.0.0" +date-released: "2025-08-24" +authors: + - family-names: "Lau" + given-names: "Pak Kin" +identifiers: [] +preferred-citation: + type: dataset + title: "PPMI Connectivity Graphs — Derivatives (HF Staging)" + authors: + - family-names: "Lau" + given-names: "Pak Kin" + year: 2025 + version: "1.0.0" \ No newline at end of file diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000000000000000000000000000000000000..6dccc6257f40b4e38e302d2c88a9e0ec50576cb5 --- /dev/null +++ b/LICENSE @@ -0,0 +1,9 @@ +This repository contains two licensing regimes: + +1) DATA (everything under data/, participants.tsv, phenotype/, and metadata tables): + Creative Commons Attribution–NonCommercial–ShareAlike 4.0 International (CC BY-NC-SA 4.0) + https://creativecommons.org/licenses/by-nc-sa/4.0/ + +2) CODE & DOCS (README.md, dataset_description.json, CITATION.cff, example snippets): + Apache License 2.0 + https://www.apache.org/licenses/LICENSE-2.0 \ No newline at end of file diff --git a/README.md b/README.md index 7be5fc7f47d5db027d120b8024982df93db95b74..31316ccc10ab4d90cc21a0dc715ffed37f5a42e9 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,71 @@ ---- -license: mit ---- + +# PPMI Connectivity Graphs — HF Staging (Derivatives) + +This dataset ships **ready-to-use functional brain connectivity graphs** derived from the PPMI cohort in a BIDS-ish *derivatives* layout. For each subject and parcellation, we include: +- **ROI time-series** (`*_desc-timeseries_parc-.mat`) +- **Pearson correlation connectivity matrix** (`*_desc-correlation_matrix_parc-.mat`) +- **JSON sidecars** with summary fields (nodes, measure, symmetric/weighted flags) + +## Contents +``` + +data/ +parc-/ +sub-/ +sub-\_desc-timeseries\_parc-.mat +sub-\_desc-correlation\_matrix\_parc-.mat +\*.json +manifests/ +manifest.jsonl # one JSON object per raw file (sha256, bytes, target\_rel) +participants.tsv +phenotype/ # subject-level variables (if present) +metadata/ +raw/ # resources & summaries used to build the set +artifacts/ # inventory, checks, B5 manifest & reports +provenance/ # author notes, dataset summaries, exclusions + +```` + +## Quick start (Python) +```python +from huggingface_hub import snapshot_download +from pathlib import Path +from scipy.io import loadmat + +root = Path(snapshot_download(repo_id="/", repo_type="dataset", revision="")) +pid, parc = "sub-prodromal75492", "ward100" +ts = loadmat(root / f"data/parc-{parc}/{pid}/{pid}_desc-timeseries_parc-{parc}.mat") +cm = loadmat(root / f"data/parc-{parc}/{pid}/{pid}_desc-correlation_matrix_parc-{parc}.mat") + +# common variable names (fallback-friendly) +X = next((ts.get(k) for k in ["features_timeseries","timeseries","X"] if k in ts), None) # (nodes × time) +A = next((cm.get(k) for k in ["correlation_matrix","corr","A"] if k in cm), None) # (nodes × nodes) +print("Timeseries:", None if X is None else X.shape, " Connectivity:", None if A is None else A.shape) +```` + +## Cohort & Metadata + +* `participants.tsv` (+ optional `participants.json`) +* `phenotype/` (subject-level variables) +* `metadata/raw/`, `metadata/artifacts/`, `metadata/provenance/` (provenance, inventories, checks) +* JSON sidecars colocated with `.mat` under `data/` +* Parquet mirrors (optional, if you add them later) + +## Integrity + +* A machine manifest lives at `manifests/manifest.jsonl` (one JSON object per raw file) with SHA-256 and byte size. +* You can re-compute and verify locally if needed. + +## License + +* **Data** (everything under `data/`, `participants.tsv`, `phenotype/`, and `metadata` tables): **CC BY-NC-SA 4.0**. +* **Docs & examples** (this README, helper scripts): **Apache-2.0**. + See `LICENSE` for details. + +## How to cite + +See `CITATION.cff`. Please also acknowledge **PPMI** and the original derivative providers. + +## Changelog + +* **v1.0.0** — Initial HF release: multi-schema connectivity with cohort tables & provenance. diff --git a/data/parc-AAL116/sub-control100890/sub-control100890_desc-corr_parc-AAL116_connectivity.json b/data/parc-AAL116/sub-control100890/sub-control100890_desc-corr_parc-AAL116_connectivity.json new file mode 100644 index 0000000000000000000000000000000000000000..e041bb81d0e04e3ece8c9d348aef6a687aa65ef6 --- /dev/null +++ b/data/parc-AAL116/sub-control100890/sub-control100890_desc-corr_parc-AAL116_connectivity.json @@ -0,0 +1,16 @@ +{ + "Parcellation": "AAL116", + "NodeCount": 116, + "Measure": "PearsonCorrelation", + "Weighted": true, + "Symmetric": true, + "FisherZ": false, + "SourceTimeseries": "sub-control100890_desc-timeseries_parc-AAL116.mat", + "GeneratedBy": [ + { + "Name": "Author-provided PPMI graphs", + "Version": "v2", + "Description": "Reorganized by this repository into BIDS-like derivatives." + } + ] +} \ No newline at end of file diff --git a/data/parc-AAL116/sub-control100890/sub-control100890_desc-correlation_matrix_parc-AAL116.json b/data/parc-AAL116/sub-control100890/sub-control100890_desc-correlation_matrix_parc-AAL116.json new file mode 100644 index 0000000000000000000000000000000000000000..e041bb81d0e04e3ece8c9d348aef6a687aa65ef6 --- /dev/null +++ b/data/parc-AAL116/sub-control100890/sub-control100890_desc-correlation_matrix_parc-AAL116.json @@ -0,0 +1,16 @@ +{ + "Parcellation": "AAL116", + "NodeCount": 116, + "Measure": "PearsonCorrelation", + "Weighted": true, + "Symmetric": true, + "FisherZ": false, + "SourceTimeseries": "sub-control100890_desc-timeseries_parc-AAL116.mat", + "GeneratedBy": [ + { + "Name": "Author-provided PPMI graphs", + "Version": "v2", + "Description": "Reorganized by this repository into BIDS-like derivatives." + } + ] +} \ No newline at end of file diff --git a/data/parc-AAL116/sub-control100890/sub-control100890_desc-correlation_matrix_parc-AAL116.mat b/data/parc-AAL116/sub-control100890/sub-control100890_desc-correlation_matrix_parc-AAL116.mat new file mode 100644 index 0000000000000000000000000000000000000000..afdd538895ffa03b5fa44d40dad963bf2124c890 Binary files /dev/null and b/data/parc-AAL116/sub-control100890/sub-control100890_desc-correlation_matrix_parc-AAL116.mat differ diff --git a/data/parc-AAL116/sub-control100890/sub-control100890_desc-timeseries_parc-AAL116.json b/data/parc-AAL116/sub-control100890/sub-control100890_desc-timeseries_parc-AAL116.json new file mode 100644 index 0000000000000000000000000000000000000000..26c669301a88c36d03f704faf4ef49323a151db7 --- /dev/null +++ b/data/parc-AAL116/sub-control100890/sub-control100890_desc-timeseries_parc-AAL116.json @@ -0,0 +1,9 @@ +{ + "Parcellation": "AAL116", + "NodeCount": 116, + "TR": null, + "Filtering": { + "Bandpass": null, + "Denoising": "unknown (author-provided)" + } +} 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sub-control100890controlward100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_ward100_correlation_matrix.mat140184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_ward100_features_timeseries.mat19618411
sub-control3351controlAAL116C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_AAL116_correlation_matrix.mat1107832C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_AAL116_features_timeseries.mat119506411
sub-control3351controlharvard48C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_harvard48_correlation_matrix.mat118616C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_harvard48_features_timeseries.mat18082411
sub-control3351controlkmeans100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_kmeans100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_kmeans100_features_timeseries.mat116818411
sub-control3351controlschaefer100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_schaefer100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_schaefer100_features_timeseries.mat116818411
sub-control3351controlward100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_ward100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_ward100_features_timeseries.mat116818411
sub-control3353controlAAL116C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_AAL116_correlation_matrix.mat1107832C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_AAL116_features_timeseries.mat119506411
sub-control3353controlharvard48C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_harvard48_correlation_matrix.mat118616C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_harvard48_features_timeseries.mat18082411
sub-control3353controlkmeans100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_kmeans100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_kmeans100_features_timeseries.mat116818411
sub-control3353controlschaefer100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_schaefer100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_schaefer100_features_timeseries.mat116818411
sub-control3353controlward100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_ward100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_ward100_features_timeseries.mat116818411
sub-control3361controlAAL116C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_AAL116_correlation_matrix.mat1107832C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_AAL116_features_timeseries.mat119506411
sub-control3361controlharvard48C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_harvard48_correlation_matrix.mat118616C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_harvard48_features_timeseries.mat18082411
sub-control3361controlkmeans100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_kmeans100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_kmeans100_features_timeseries.mat116818411
sub-control3361controlschaefer100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_schaefer100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_schaefer100_features_timeseries.mat116818411
sub-control3361controlward100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_ward100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_ward100_features_timeseries.mat116818411
sub-control3368controlAAL116C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_AAL116_correlation_matrix.mat1107832C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_AAL116_features_timeseries.mat119506411
sub-control3368controlharvard48C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_harvard48_correlation_matrix.mat118616C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_harvard48_features_timeseries.mat18082411
sub-control3368controlkmeans100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_kmeans100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_kmeans100_features_timeseries.mat116818411
sub-control3368controlschaefer100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_schaefer100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_schaefer100_features_timeseries.mat116818411
sub-control3368controlward100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_ward100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_ward100_features_timeseries.mat116818411
sub-control3369controlAAL116C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_AAL116_correlation_matrix.mat1107832C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_AAL116_features_timeseries.mat119506411
sub-control3369controlharvard48C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_harvard48_correlation_matrix.mat118616C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_harvard48_features_timeseries.mat18082411
sub-control3369controlkmeans100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_kmeans100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_kmeans100_features_timeseries.mat116818411
sub-control3369controlschaefer100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_schaefer100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_schaefer100_features_timeseries.mat116818411
sub-control3369controlward100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_ward100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_ward100_features_timeseries.mat116818411
sub-control3389controlAAL116C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3389\sub-control3389_AAL116_correlation_matrix.mat1107832C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3389\sub-control3389_AAL116_features_timeseries.mat119506411
sub-control3389controlharvard48C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3389\sub-control3389_harvard48_correlation_matrix.mat118616C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3389\sub-control3389_harvard48_features_timeseries.mat18082411
sub-control3389controlkmeans100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3389\sub-control3389_kmeans100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3389\sub-control3389_kmeans100_features_timeseries.mat116818411
sub-control3389controlschaefer100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3389\sub-control3389_schaefer100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3389\sub-control3389_schaefer100_features_timeseries.mat116818411
sub-control3389controlward100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3389\sub-control3389_ward100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3389\sub-control3389_ward100_features_timeseries.mat116818411
sub-control3390controlAAL116C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3390\sub-control3390_AAL116_correlation_matrix.mat1107832C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3390\sub-control3390_AAL116_features_timeseries.mat119506411
sub-control3390controlharvard48C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3390\sub-control3390_harvard48_correlation_matrix.mat118616C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3390\sub-control3390_harvard48_features_timeseries.mat18082411
sub-control3390controlkmeans100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3390\sub-control3390_kmeans100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3390\sub-control3390_kmeans100_features_timeseries.mat116818411
sub-control3390controlschaefer100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3390\sub-control3390_schaefer100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3390\sub-control3390_schaefer100_features_timeseries.mat116818411
sub-control3390controlward100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3390\sub-control3390_ward100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3390\sub-control3390_ward100_features_timeseries.mat116818411
sub-control3554controlAAL116C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3554\sub-control3554_AAL116_correlation_matrix.mat1107832C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3554\sub-control3554_AAL116_features_timeseries.mat119506411
sub-control3554controlharvard48C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3554\sub-control3554_harvard48_correlation_matrix.mat118616C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3554\sub-control3554_harvard48_features_timeseries.mat18082411
sub-control3554controlkmeans100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3554\sub-control3554_kmeans100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3554\sub-control3554_kmeans100_features_timeseries.mat116818411
sub-control3554controlschaefer100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3554\sub-control3554_schaefer100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3554\sub-control3554_schaefer100_features_timeseries.mat116818411
sub-control3554controlward100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3554\sub-control3554_ward100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3554\sub-control3554_ward100_features_timeseries.mat116818411
sub-control3563controlAAL116C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3563\sub-control3563_AAL116_correlation_matrix.mat1107832C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3563\sub-control3563_AAL116_features_timeseries.mat119506411
sub-control3563controlharvard48C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3563\sub-control3563_harvard48_correlation_matrix.mat118616C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3563\sub-control3563_harvard48_features_timeseries.mat18082411
sub-control3563controlkmeans100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3563\sub-control3563_kmeans100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3563\sub-control3563_kmeans100_features_timeseries.mat116818411
sub-control3563controlschaefer100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3563\sub-control3563_schaefer100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3563\sub-control3563_schaefer100_features_timeseries.mat116818411
sub-control3563controlward100C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3563\sub-control3563_ward100_correlation_matrix.mat180184C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3563\sub-control3563_ward100_features_timeseries.mat116818411

Per-parcellation summary (included only)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
parcellationsubjects_with_anyrows_with_paircorr_filests_filescorr_bytests_bytes
AAL1161951951951952091959238057896
harvard48195195195195361168815769128
kmeans1001951951951951555588032813480
schaefer1001951951951951555588032813480
ward1001951951951951555588032813480
\ No newline at end of file diff --git a/metadata/artifacts/B3_participants_summary.html b/metadata/artifacts/B3_participants_summary.html new file mode 100644 index 0000000000000000000000000000000000000000..492606cc98c403a4ee921713c0739bb1aa6a829f --- /dev/null +++ b/metadata/artifacts/B3_participants_summary.html @@ -0,0 +1,742 @@ +

B3 Participants Summary

Rows: 195

Column coverage

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
columnnon_nullpercent
participant_id195.0100.0
patno195.0100.0
group195.0100.0
age195.0100.0
sex195.0100.0
site195.0100.0
visits_noninv195.0100.0
has_noninv195.0100.0
included195.0100.0
has_graph195.0100.0
T1w195.0100.0
fMRI_rest195.0100.0
DWI195.0100.0
T2w195.0100.0
FLAIR195.0100.0
DAT_SPECT195.0100.0
PET195.0100.0
SWI195.0100.0
ASL195.0100.0

By group

+ + + + + + + + + + + + + + + + + + + + + + + + +
groupn
patient113
prodromal53
control15
swedd14

By sex

+ + + + + + + + + + + + + + + + +
sexn
M121
F74

Modality availability (subject counts)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
modalityn
has_graph195
T1w0
fMRI_rest0
DWI0
T2w0
FLAIR0
DAT_SPECT0
PET0
SWI0
ASL0

Modality availability by group

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
grouphas_graphT1wfMRI_restDWIT2wFLAIRDAT_SPECTPETSWIASL
control15000000000
patient113000000000
prodromal53000000000
swedd14000000000

First 20 participants

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
participant_idpatnogroupagesexsitevisits_noninvhas_noninvincludedhas_graphT1wfMRI_restDWIT2wFLAIRDAT_SPECTPETSWIASL
sub-control100890100890control78.087846MUnknown10111000000000
sub-control33513351control67.336085MUnknown10111000000000
sub-control33533353control56.001150FUnknown10111000000000
sub-control33613361control56.162686FUnknown10111000000000
sub-control33683368control53.167416FUnknown10111000000000
sub-control33693369control44.000904MUnknown10111000000000
sub-control33893389control71.505917MUnknown10111000000000
sub-control33903390control65.759050MUnknown10111000000000
sub-control35543554control75.251374MUnknown10111000000000
sub-control35633563control59.757558MUnknown10111000000000
sub-control35653565control53.747852MUnknown10111000000000
sub-control35713571control45.665551MUnknown10111000000000
sub-control37693769control70.418968MUnknown10111000000000
sub-control37793779control55.834138MUnknown10111000000000
sub-control40324032control67.916521MUnknown10111000000000
sub-patient31023102patient63.503015MUnknown10111000000000
sub-patient31053105patient68.496958MUnknown10111000000000
sub-patient31073107patient69.496294MUnknown10111000000000
sub-patient31083108patient49.665633FUnknown10111000000000
sub-patient31113111patient64.581750MUnknown10111000000000

Age summary

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + +
countmeanstdmin10%25%50%75%90%max
195.061.5125999.43668637.83787549.1207954.79373362.67342968.49969573.13825784.248137
\ No newline at end of file diff --git a/metadata/artifacts/B4_clinical_summary.html b/metadata/artifacts/B4_clinical_summary.html new file mode 100644 index 0000000000000000000000000000000000000000..dc494c4be1989863965cd71e79f6746328d58d80 --- /dev/null +++ b/metadata/artifacts/B4_clinical_summary.html @@ -0,0 +1,11 @@ +

B4 Clinical Summary

Rows: 195

Coverage

+ + + + + + + + + +
phenotypenon_nullpercent

No phenotype columns with data to plot.

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parc-ward100/sub-swedd3871/sub-swedd3871_desc-corr_parc-ward100_connectivity.json +0e5943f44b2e6a945491c4c95d0c13e85851397a09b38a327d0fad01a1b5e2ea parc-ward100/sub-swedd3871/sub-swedd3871_desc-timeseries_parc-ward100.json diff --git a/metadata/artifacts/B5_derivatives_report.html b/metadata/artifacts/B5_derivatives_report.html new file mode 100644 index 0000000000000000000000000000000000000000..2e7fba2bf997dfbff960b845d91043f044400008 --- /dev/null +++ b/metadata/artifacts/B5_derivatives_report.html @@ -0,0 +1,168 @@ +

B5 Derivatives Report

Output root: C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\derivatives\connectivity

Counts by parcellation

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + +
parcellationpairs
AAL116195
harvard48195
kmeans100195
schaefer100195
ward100195

Top subjects by #parcellations

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participant_idparcellations
sub-control1008905
sub-control33515
sub-control33535
sub-control33615
sub-control33685
sub-control33695
sub-control33895
sub-control33905
sub-control35545
sub-control35635
sub-control35655
sub-control35715
sub-control37695
sub-control37795
sub-control40325
sub-patient31025
sub-patient31055
sub-patient31075
sub-patient31085
sub-patient31115

Sample file list (first 50 .mat files)

parc-AAL116/sub-control100890/sub-control100890_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control100890/sub-control100890_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3351/sub-control3351_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3351/sub-control3351_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3353/sub-control3353_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3353/sub-control3353_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3361/sub-control3361_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3361/sub-control3361_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3368/sub-control3368_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3368/sub-control3368_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3369/sub-control3369_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3369/sub-control3369_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3389/sub-control3389_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3389/sub-control3389_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3390/sub-control3390_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3390/sub-control3390_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3554/sub-control3554_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3554/sub-control3554_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3563/sub-control3563_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3563/sub-control3563_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3565/sub-control3565_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3565/sub-control3565_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3571/sub-control3571_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3571/sub-control3571_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3769/sub-control3769_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3769/sub-control3769_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control3779/sub-control3779_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control3779/sub-control3779_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-control4032/sub-control4032_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-control4032/sub-control4032_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-patient3102/sub-patient3102_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-patient3102/sub-patient3102_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-patient3105/sub-patient3105_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-patient3105/sub-patient3105_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-patient3107/sub-patient3107_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-patient3107/sub-patient3107_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-patient3108/sub-patient3108_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-patient3108/sub-patient3108_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-patient3111/sub-patient3111_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-patient3111/sub-patient3111_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-patient3113/sub-patient3113_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-patient3113/sub-patient3113_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-patient3116/sub-patient3116_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-patient3116/sub-patient3116_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-patient3118/sub-patient3118_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-patient3118/sub-patient3118_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-patient3119/sub-patient3119_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-patient3119/sub-patient3119_desc-timeseries_parc-AAL116.mat
+parc-AAL116/sub-patient3120/sub-patient3120_desc-corr_parc-AAL116_connectivity.mat
+parc-AAL116/sub-patient3120/sub-patient3120_desc-timeseries_parc-AAL116.mat
\ No newline at end of file diff --git a/metadata/artifacts/B5_manifest.csv b/metadata/artifacts/B5_manifest.csv new file mode 100644 index 0000000000000000000000000000000000000000..e2e727ceb02530a151a1844081614d27b3a1b899 --- /dev/null +++ b/metadata/artifacts/B5_manifest.csv @@ -0,0 +1,976 @@ +participant_id,parcellation,expected_nodes,src_corr,src_ts,target_corr_rel,target_ts_rel,bytes_corr,bytes_ts +sub-control100890,AAL116,116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_AAL116_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_AAL116_features_timeseries.mat,parc-AAL116/sub-control100890/sub-control100890_desc-corr_parc-AAL116_connectivity.mat,parc-AAL116/sub-control100890/sub-control100890_desc-timeseries_parc-AAL116.mat,54008,111544 +sub-control100890,harvard48,48,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_harvard48_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_harvard48_features_timeseries.mat,parc-harvard48/sub-control100890/sub-control100890_desc-corr_parc-harvard48_connectivity.mat,parc-harvard48/sub-control100890/sub-control100890_desc-timeseries_parc-harvard48.mat,9400,46264 +sub-control100890,kmeans100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_kmeans100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_kmeans100_features_timeseries.mat,parc-kmeans100/sub-control100890/sub-control100890_desc-corr_parc-kmeans100_connectivity.mat,parc-kmeans100/sub-control100890/sub-control100890_desc-timeseries_parc-kmeans100.mat,40184,96184 +sub-control100890,schaefer100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_schaefer100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_schaefer100_features_timeseries.mat,parc-schaefer100/sub-control100890/sub-control100890_desc-corr_parc-schaefer100_connectivity.mat,parc-schaefer100/sub-control100890/sub-control100890_desc-timeseries_parc-schaefer100.mat,40184,96184 +sub-control100890,ward100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_ward100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_ward100_features_timeseries.mat,parc-ward100/sub-control100890/sub-control100890_desc-corr_parc-ward100_connectivity.mat,parc-ward100/sub-control100890/sub-control100890_desc-timeseries_parc-ward100.mat,40184,96184 +sub-control3351,AAL116,116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_AAL116_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_AAL116_features_timeseries.mat,parc-AAL116/sub-control3351/sub-control3351_desc-corr_parc-AAL116_connectivity.mat,parc-AAL116/sub-control3351/sub-control3351_desc-timeseries_parc-AAL116.mat,107832,195064 +sub-control3351,harvard48,48,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_harvard48_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_harvard48_features_timeseries.mat,parc-harvard48/sub-control3351/sub-control3351_desc-corr_parc-harvard48_connectivity.mat,parc-harvard48/sub-control3351/sub-control3351_desc-timeseries_parc-harvard48.mat,18616,80824 +sub-control3351,kmeans100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_kmeans100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_kmeans100_features_timeseries.mat,parc-kmeans100/sub-control3351/sub-control3351_desc-corr_parc-kmeans100_connectivity.mat,parc-kmeans100/sub-control3351/sub-control3351_desc-timeseries_parc-kmeans100.mat,80184,168184 +sub-control3351,schaefer100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_schaefer100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_schaefer100_features_timeseries.mat,parc-schaefer100/sub-control3351/sub-control3351_desc-corr_parc-schaefer100_connectivity.mat,parc-schaefer100/sub-control3351/sub-control3351_desc-timeseries_parc-schaefer100.mat,80184,168184 +sub-control3351,ward100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_ward100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_ward100_features_timeseries.mat,parc-ward100/sub-control3351/sub-control3351_desc-corr_parc-ward100_connectivity.mat,parc-ward100/sub-control3351/sub-control3351_desc-timeseries_parc-ward100.mat,80184,168184 +sub-control3353,AAL116,116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_AAL116_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_AAL116_features_timeseries.mat,parc-AAL116/sub-control3353/sub-control3353_desc-corr_parc-AAL116_connectivity.mat,parc-AAL116/sub-control3353/sub-control3353_desc-timeseries_parc-AAL116.mat,107832,195064 +sub-control3353,harvard48,48,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_harvard48_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_harvard48_features_timeseries.mat,parc-harvard48/sub-control3353/sub-control3353_desc-corr_parc-harvard48_connectivity.mat,parc-harvard48/sub-control3353/sub-control3353_desc-timeseries_parc-harvard48.mat,18616,80824 +sub-control3353,kmeans100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_kmeans100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_kmeans100_features_timeseries.mat,parc-kmeans100/sub-control3353/sub-control3353_desc-corr_parc-kmeans100_connectivity.mat,parc-kmeans100/sub-control3353/sub-control3353_desc-timeseries_parc-kmeans100.mat,80184,168184 +sub-control3353,schaefer100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_schaefer100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_schaefer100_features_timeseries.mat,parc-schaefer100/sub-control3353/sub-control3353_desc-corr_parc-schaefer100_connectivity.mat,parc-schaefer100/sub-control3353/sub-control3353_desc-timeseries_parc-schaefer100.mat,80184,168184 +sub-control3353,ward100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_ward100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_ward100_features_timeseries.mat,parc-ward100/sub-control3353/sub-control3353_desc-corr_parc-ward100_connectivity.mat,parc-ward100/sub-control3353/sub-control3353_desc-timeseries_parc-ward100.mat,80184,168184 +sub-control3361,AAL116,116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_AAL116_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_AAL116_features_timeseries.mat,parc-AAL116/sub-control3361/sub-control3361_desc-corr_parc-AAL116_connectivity.mat,parc-AAL116/sub-control3361/sub-control3361_desc-timeseries_parc-AAL116.mat,107832,195064 +sub-control3361,harvard48,48,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_harvard48_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_harvard48_features_timeseries.mat,parc-harvard48/sub-control3361/sub-control3361_desc-corr_parc-harvard48_connectivity.mat,parc-harvard48/sub-control3361/sub-control3361_desc-timeseries_parc-harvard48.mat,18616,80824 +sub-control3361,kmeans100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_kmeans100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_kmeans100_features_timeseries.mat,parc-kmeans100/sub-control3361/sub-control3361_desc-corr_parc-kmeans100_connectivity.mat,parc-kmeans100/sub-control3361/sub-control3361_desc-timeseries_parc-kmeans100.mat,80184,168184 +sub-control3361,schaefer100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_schaefer100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_schaefer100_features_timeseries.mat,parc-schaefer100/sub-control3361/sub-control3361_desc-corr_parc-schaefer100_connectivity.mat,parc-schaefer100/sub-control3361/sub-control3361_desc-timeseries_parc-schaefer100.mat,80184,168184 +sub-control3361,ward100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_ward100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_ward100_features_timeseries.mat,parc-ward100/sub-control3361/sub-control3361_desc-corr_parc-ward100_connectivity.mat,parc-ward100/sub-control3361/sub-control3361_desc-timeseries_parc-ward100.mat,80184,168184 +sub-control3368,AAL116,116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_AAL116_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_AAL116_features_timeseries.mat,parc-AAL116/sub-control3368/sub-control3368_desc-corr_parc-AAL116_connectivity.mat,parc-AAL116/sub-control3368/sub-control3368_desc-timeseries_parc-AAL116.mat,107832,195064 +sub-control3368,harvard48,48,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_harvard48_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_harvard48_features_timeseries.mat,parc-harvard48/sub-control3368/sub-control3368_desc-corr_parc-harvard48_connectivity.mat,parc-harvard48/sub-control3368/sub-control3368_desc-timeseries_parc-harvard48.mat,18616,80824 +sub-control3368,kmeans100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_kmeans100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_kmeans100_features_timeseries.mat,parc-kmeans100/sub-control3368/sub-control3368_desc-corr_parc-kmeans100_connectivity.mat,parc-kmeans100/sub-control3368/sub-control3368_desc-timeseries_parc-kmeans100.mat,80184,168184 +sub-control3368,schaefer100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_schaefer100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_schaefer100_features_timeseries.mat,parc-schaefer100/sub-control3368/sub-control3368_desc-corr_parc-schaefer100_connectivity.mat,parc-schaefer100/sub-control3368/sub-control3368_desc-timeseries_parc-schaefer100.mat,80184,168184 +sub-control3368,ward100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_ward100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3368\sub-control3368_ward100_features_timeseries.mat,parc-ward100/sub-control3368/sub-control3368_desc-corr_parc-ward100_connectivity.mat,parc-ward100/sub-control3368/sub-control3368_desc-timeseries_parc-ward100.mat,80184,168184 +sub-control3369,AAL116,116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_AAL116_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_AAL116_features_timeseries.mat,parc-AAL116/sub-control3369/sub-control3369_desc-corr_parc-AAL116_connectivity.mat,parc-AAL116/sub-control3369/sub-control3369_desc-timeseries_parc-AAL116.mat,107832,195064 +sub-control3369,harvard48,48,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_harvard48_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3369\sub-control3369_harvard48_features_timeseries.mat,parc-harvard48/sub-control3369/sub-control3369_desc-corr_parc-harvard48_connectivity.mat,parc-harvard48/sub-control3369/sub-control3369_desc-timeseries_parc-harvard48.mat,18616,80824 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+sub-swedd3582,kmeans100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_kmeans100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_kmeans100_features_timeseries.mat,parc-kmeans100/sub-swedd3582/sub-swedd3582_desc-corr_parc-kmeans100_connectivity.mat,parc-kmeans100/sub-swedd3582/sub-swedd3582_desc-timeseries_parc-kmeans100.mat,80184,168184 +sub-swedd3582,schaefer100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_schaefer100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_schaefer100_features_timeseries.mat,parc-schaefer100/sub-swedd3582/sub-swedd3582_desc-corr_parc-schaefer100_connectivity.mat,parc-schaefer100/sub-swedd3582/sub-swedd3582_desc-timeseries_parc-schaefer100.mat,80184,168184 +sub-swedd3582,ward100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_ward100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_ward100_features_timeseries.mat,parc-ward100/sub-swedd3582/sub-swedd3582_desc-corr_parc-ward100_connectivity.mat,parc-ward100/sub-swedd3582/sub-swedd3582_desc-timeseries_parc-ward100.mat,80184,168184 +sub-swedd3820,AAL116,116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_AAL116_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_AAL116_features_timeseries.mat,parc-AAL116/sub-swedd3820/sub-swedd3820_desc-corr_parc-AAL116_connectivity.mat,parc-AAL116/sub-swedd3820/sub-swedd3820_desc-timeseries_parc-AAL116.mat,107832,195064 +sub-swedd3820,harvard48,48,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_harvard48_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_harvard48_features_timeseries.mat,parc-harvard48/sub-swedd3820/sub-swedd3820_desc-corr_parc-harvard48_connectivity.mat,parc-harvard48/sub-swedd3820/sub-swedd3820_desc-timeseries_parc-harvard48.mat,18616,80824 +sub-swedd3820,kmeans100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_kmeans100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_kmeans100_features_timeseries.mat,parc-kmeans100/sub-swedd3820/sub-swedd3820_desc-corr_parc-kmeans100_connectivity.mat,parc-kmeans100/sub-swedd3820/sub-swedd3820_desc-timeseries_parc-kmeans100.mat,80184,168184 +sub-swedd3820,schaefer100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_schaefer100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_schaefer100_features_timeseries.mat,parc-schaefer100/sub-swedd3820/sub-swedd3820_desc-corr_parc-schaefer100_connectivity.mat,parc-schaefer100/sub-swedd3820/sub-swedd3820_desc-timeseries_parc-schaefer100.mat,80184,168184 +sub-swedd3820,ward100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_ward100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_ward100_features_timeseries.mat,parc-ward100/sub-swedd3820/sub-swedd3820_desc-corr_parc-ward100_connectivity.mat,parc-ward100/sub-swedd3820/sub-swedd3820_desc-timeseries_parc-ward100.mat,80184,168184 +sub-swedd3821,AAL116,116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_AAL116_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_AAL116_features_timeseries.mat,parc-AAL116/sub-swedd3821/sub-swedd3821_desc-corr_parc-AAL116_connectivity.mat,parc-AAL116/sub-swedd3821/sub-swedd3821_desc-timeseries_parc-AAL116.mat,107832,195064 +sub-swedd3821,harvard48,48,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_harvard48_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_harvard48_features_timeseries.mat,parc-harvard48/sub-swedd3821/sub-swedd3821_desc-corr_parc-harvard48_connectivity.mat,parc-harvard48/sub-swedd3821/sub-swedd3821_desc-timeseries_parc-harvard48.mat,18616,80824 +sub-swedd3821,kmeans100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_kmeans100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_kmeans100_features_timeseries.mat,parc-kmeans100/sub-swedd3821/sub-swedd3821_desc-corr_parc-kmeans100_connectivity.mat,parc-kmeans100/sub-swedd3821/sub-swedd3821_desc-timeseries_parc-kmeans100.mat,80184,168184 +sub-swedd3821,schaefer100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_schaefer100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_schaefer100_features_timeseries.mat,parc-schaefer100/sub-swedd3821/sub-swedd3821_desc-corr_parc-schaefer100_connectivity.mat,parc-schaefer100/sub-swedd3821/sub-swedd3821_desc-timeseries_parc-schaefer100.mat,80184,168184 +sub-swedd3821,ward100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_ward100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_ward100_features_timeseries.mat,parc-ward100/sub-swedd3821/sub-swedd3821_desc-corr_parc-ward100_connectivity.mat,parc-ward100/sub-swedd3821/sub-swedd3821_desc-timeseries_parc-ward100.mat,80184,168184 +sub-swedd3836,AAL116,116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_AAL116_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_AAL116_features_timeseries.mat,parc-AAL116/sub-swedd3836/sub-swedd3836_desc-corr_parc-AAL116_connectivity.mat,parc-AAL116/sub-swedd3836/sub-swedd3836_desc-timeseries_parc-AAL116.mat,107832,195064 +sub-swedd3836,harvard48,48,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_harvard48_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_harvard48_features_timeseries.mat,parc-harvard48/sub-swedd3836/sub-swedd3836_desc-corr_parc-harvard48_connectivity.mat,parc-harvard48/sub-swedd3836/sub-swedd3836_desc-timeseries_parc-harvard48.mat,18616,80824 +sub-swedd3836,kmeans100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_kmeans100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_kmeans100_features_timeseries.mat,parc-kmeans100/sub-swedd3836/sub-swedd3836_desc-corr_parc-kmeans100_connectivity.mat,parc-kmeans100/sub-swedd3836/sub-swedd3836_desc-timeseries_parc-kmeans100.mat,80184,168184 +sub-swedd3836,schaefer100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_schaefer100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_schaefer100_features_timeseries.mat,parc-schaefer100/sub-swedd3836/sub-swedd3836_desc-corr_parc-schaefer100_connectivity.mat,parc-schaefer100/sub-swedd3836/sub-swedd3836_desc-timeseries_parc-schaefer100.mat,80184,168184 +sub-swedd3836,ward100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_ward100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_ward100_features_timeseries.mat,parc-ward100/sub-swedd3836/sub-swedd3836_desc-corr_parc-ward100_connectivity.mat,parc-ward100/sub-swedd3836/sub-swedd3836_desc-timeseries_parc-ward100.mat,80184,168184 +sub-swedd3871,AAL116,116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_AAL116_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_AAL116_features_timeseries.mat,parc-AAL116/sub-swedd3871/sub-swedd3871_desc-corr_parc-AAL116_connectivity.mat,parc-AAL116/sub-swedd3871/sub-swedd3871_desc-timeseries_parc-AAL116.mat,107832,195064 +sub-swedd3871,harvard48,48,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_harvard48_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_harvard48_features_timeseries.mat,parc-harvard48/sub-swedd3871/sub-swedd3871_desc-corr_parc-harvard48_connectivity.mat,parc-harvard48/sub-swedd3871/sub-swedd3871_desc-timeseries_parc-harvard48.mat,18616,80824 +sub-swedd3871,kmeans100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_kmeans100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_kmeans100_features_timeseries.mat,parc-kmeans100/sub-swedd3871/sub-swedd3871_desc-corr_parc-kmeans100_connectivity.mat,parc-kmeans100/sub-swedd3871/sub-swedd3871_desc-timeseries_parc-kmeans100.mat,80184,168184 +sub-swedd3871,schaefer100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_schaefer100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_schaefer100_features_timeseries.mat,parc-schaefer100/sub-swedd3871/sub-swedd3871_desc-corr_parc-schaefer100_connectivity.mat,parc-schaefer100/sub-swedd3871/sub-swedd3871_desc-timeseries_parc-schaefer100.mat,80184,168184 +sub-swedd3871,ward100,100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_ward100_correlation_matrix.mat,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_ward100_features_timeseries.mat,parc-ward100/sub-swedd3871/sub-swedd3871_desc-corr_parc-ward100_connectivity.mat,parc-ward100/sub-swedd3871/sub-swedd3871_desc-timeseries_parc-ward100.mat,80184,168184 diff --git a/metadata/artifacts/B5_originals_to_review.txt b/metadata/artifacts/B5_originals_to_review.txt new file mode 100644 index 0000000000000000000000000000000000000000..f202eb04de5ebe1ce78ddeed04cc9f64230279dc --- /dev/null +++ b/metadata/artifacts/B5_originals_to_review.txt @@ -0,0 +1,977 @@ +# Originals now duplicated (one line per subject/parcellation) +# Review and (optionally) remove originals manually once you're comfortable. +sub-control100890 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_AAL116_features_timeseries.mat +sub-control100890 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_harvard48_features_timeseries.mat +sub-control100890 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_kmeans100_features_timeseries.mat +sub-control100890 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_schaefer100_features_timeseries.mat +sub-control100890 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_ward100_features_timeseries.mat +sub-control3351 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_AAL116_features_timeseries.mat +sub-control3351 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_harvard48_features_timeseries.mat +sub-control3351 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_kmeans100_features_timeseries.mat +sub-control3351 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_schaefer100_features_timeseries.mat +sub-control3351 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_ward100_features_timeseries.mat +sub-control3353 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_AAL116_features_timeseries.mat +sub-control3353 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_harvard48_features_timeseries.mat +sub-control3353 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_kmeans100_features_timeseries.mat +sub-control3353 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_schaefer100_features_timeseries.mat +sub-control3353 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3353\sub-control3353_ward100_features_timeseries.mat +sub-control3361 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_AAL116_features_timeseries.mat +sub-control3361 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_harvard48_features_timeseries.mat +sub-control3361 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3361\sub-control3361_kmeans100_features_timeseries.mat +sub-control3361 schaefer100 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C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-prodromal85242\sub-prodromal85242_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-prodromal85242\sub-prodromal85242_schaefer100_features_timeseries.mat +sub-prodromal85242 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-prodromal85242\sub-prodromal85242_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-prodromal85242\sub-prodromal85242_ward100_features_timeseries.mat +sub-swedd3101 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3101\sub-swedd3101_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3101\sub-swedd3101_AAL116_features_timeseries.mat +sub-swedd3101 harvard48 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C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3326\sub-swedd3326_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3326\sub-swedd3326_kmeans100_features_timeseries.mat +sub-swedd3326 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3326\sub-swedd3326_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3326\sub-swedd3326_schaefer100_features_timeseries.mat +sub-swedd3326 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3326\sub-swedd3326_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3326\sub-swedd3326_ward100_features_timeseries.mat +sub-swedd3356 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3356\sub-swedd3356_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3356\sub-swedd3356_AAL116_features_timeseries.mat +sub-swedd3356 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3356\sub-swedd3356_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3356\sub-swedd3356_harvard48_features_timeseries.mat +sub-swedd3356 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3356\sub-swedd3356_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3356\sub-swedd3356_kmeans100_features_timeseries.mat +sub-swedd3356 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3356\sub-swedd3356_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3356\sub-swedd3356_schaefer100_features_timeseries.mat +sub-swedd3356 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3356\sub-swedd3356_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3356\sub-swedd3356_ward100_features_timeseries.mat +sub-swedd3384 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3384\sub-swedd3384_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3384\sub-swedd3384_AAL116_features_timeseries.mat +sub-swedd3384 harvard48 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C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3384\sub-swedd3384_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3384\sub-swedd3384_ward100_features_timeseries.mat +sub-swedd3550 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3550\sub-swedd3550_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3550\sub-swedd3550_AAL116_features_timeseries.mat +sub-swedd3550 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3550\sub-swedd3550_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3550\sub-swedd3550_harvard48_features_timeseries.mat +sub-swedd3550 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3550\sub-swedd3550_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3550\sub-swedd3550_kmeans100_features_timeseries.mat +sub-swedd3550 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3550\sub-swedd3550_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3550\sub-swedd3550_schaefer100_features_timeseries.mat +sub-swedd3550 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3550\sub-swedd3550_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3550\sub-swedd3550_ward100_features_timeseries.mat +sub-swedd3566 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3566\sub-swedd3566_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3566\sub-swedd3566_AAL116_features_timeseries.mat +sub-swedd3566 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3566\sub-swedd3566_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3566\sub-swedd3566_harvard48_features_timeseries.mat +sub-swedd3566 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3566\sub-swedd3566_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3566\sub-swedd3566_kmeans100_features_timeseries.mat +sub-swedd3566 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3566\sub-swedd3566_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3566\sub-swedd3566_schaefer100_features_timeseries.mat +sub-swedd3566 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3566\sub-swedd3566_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3566\sub-swedd3566_ward100_features_timeseries.mat +sub-swedd3573 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3573\sub-swedd3573_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3573\sub-swedd3573_AAL116_features_timeseries.mat +sub-swedd3573 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3573\sub-swedd3573_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3573\sub-swedd3573_harvard48_features_timeseries.mat +sub-swedd3573 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3573\sub-swedd3573_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3573\sub-swedd3573_kmeans100_features_timeseries.mat +sub-swedd3573 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3573\sub-swedd3573_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3573\sub-swedd3573_schaefer100_features_timeseries.mat +sub-swedd3573 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3573\sub-swedd3573_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3573\sub-swedd3573_ward100_features_timeseries.mat +sub-swedd3580 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3580\sub-swedd3580_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3580\sub-swedd3580_AAL116_features_timeseries.mat +sub-swedd3580 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3580\sub-swedd3580_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3580\sub-swedd3580_harvard48_features_timeseries.mat +sub-swedd3580 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3580\sub-swedd3580_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3580\sub-swedd3580_kmeans100_features_timeseries.mat +sub-swedd3580 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3580\sub-swedd3580_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3580\sub-swedd3580_schaefer100_features_timeseries.mat +sub-swedd3580 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3580\sub-swedd3580_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3580\sub-swedd3580_ward100_features_timeseries.mat +sub-swedd3581 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3581\sub-swedd3581_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3581\sub-swedd3581_AAL116_features_timeseries.mat +sub-swedd3581 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3581\sub-swedd3581_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3581\sub-swedd3581_harvard48_features_timeseries.mat +sub-swedd3581 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3581\sub-swedd3581_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3581\sub-swedd3581_kmeans100_features_timeseries.mat +sub-swedd3581 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3581\sub-swedd3581_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3581\sub-swedd3581_schaefer100_features_timeseries.mat +sub-swedd3581 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3581\sub-swedd3581_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3581\sub-swedd3581_ward100_features_timeseries.mat +sub-swedd3582 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_AAL116_features_timeseries.mat +sub-swedd3582 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_harvard48_features_timeseries.mat +sub-swedd3582 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_kmeans100_features_timeseries.mat +sub-swedd3582 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_schaefer100_features_timeseries.mat +sub-swedd3582 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3582\sub-swedd3582_ward100_features_timeseries.mat +sub-swedd3820 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_AAL116_features_timeseries.mat +sub-swedd3820 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_harvard48_features_timeseries.mat +sub-swedd3820 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_kmeans100_features_timeseries.mat +sub-swedd3820 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_schaefer100_features_timeseries.mat +sub-swedd3820 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3820\sub-swedd3820_ward100_features_timeseries.mat +sub-swedd3821 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_AAL116_features_timeseries.mat +sub-swedd3821 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_harvard48_features_timeseries.mat +sub-swedd3821 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_kmeans100_features_timeseries.mat +sub-swedd3821 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_schaefer100_features_timeseries.mat +sub-swedd3821 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3821\sub-swedd3821_ward100_features_timeseries.mat +sub-swedd3836 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_AAL116_features_timeseries.mat +sub-swedd3836 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_harvard48_features_timeseries.mat +sub-swedd3836 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_kmeans100_features_timeseries.mat +sub-swedd3836 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_schaefer100_features_timeseries.mat +sub-swedd3836 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3836\sub-swedd3836_ward100_features_timeseries.mat +sub-swedd3871 AAL116 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_AAL116_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_AAL116_features_timeseries.mat +sub-swedd3871 harvard48 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_harvard48_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_harvard48_features_timeseries.mat +sub-swedd3871 kmeans100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_kmeans100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_kmeans100_features_timeseries.mat +sub-swedd3871 schaefer100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_schaefer100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_schaefer100_features_timeseries.mat +sub-swedd3871 ward100 C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_ward100_correlation_matrix.mat C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-swedd3871\sub-swedd3871_ward100_features_timeseries.mat diff --git a/metadata/artifacts/dataset_summary.yaml b/metadata/artifacts/dataset_summary.yaml new file mode 100644 index 0000000000000000000000000000000000000000..8484036273dcaa685c6d828e44bb6a4e95afb284 --- /dev/null +++ b/metadata/artifacts/dataset_summary.yaml @@ -0,0 +1,59 @@ +dataset: PPMI Graphs v2 — inventory snapshot +generated_at: '2025-08-16T23:57:59Z' +root: C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi +subjects: + total: 195 + included: 195 + excluded: + count: 0 + reasons: null + source: null +parcellations: + AAL116: + subjects_with_pair: 195 + missing_pair_subjects: 0 + files: + correlation_mats: 195 + timeseries: 195 + bytes: + correlation_mats: 20919592 + timeseries: 38057896 + harvard48: + subjects_with_pair: 195 + missing_pair_subjects: 0 + files: + correlation_mats: 195 + timeseries: 195 + bytes: + correlation_mats: 3611688 + timeseries: 15769128 + kmeans100: + subjects_with_pair: 195 + missing_pair_subjects: 0 + files: + correlation_mats: 195 + timeseries: 195 + bytes: + correlation_mats: 15555880 + timeseries: 32813480 + schaefer100: + subjects_with_pair: 195 + missing_pair_subjects: 0 + files: + correlation_mats: 195 + timeseries: 195 + bytes: + correlation_mats: 15555880 + timeseries: 32813480 + ward100: + subjects_with_pair: 195 + missing_pair_subjects: 0 + files: + correlation_mats: 195 + timeseries: 195 + bytes: + correlation_mats: 15555880 + timeseries: 32813480 +bytes_total: 223466384 +notes: +- Strict check ensures no included subject is missing a matrix–timeseries pair. diff --git a/metadata/artifacts/inventory.csv b/metadata/artifacts/inventory.csv new file mode 100644 index 0000000000000000000000000000000000000000..8c54c37e873f74d4ddde520862a4a88ef6769806 --- /dev/null +++ b/metadata/artifacts/inventory.csv @@ -0,0 +1,976 @@ +participant_id,group,parcellation,corr_path,corr_exists,corr_bytes,ts_path,ts_exists,ts_bytes,pair_ok,included +sub-control100890,control,AAL116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_AAL116_correlation_matrix.mat,1,54008,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_AAL116_features_timeseries.mat,1,111544,1,1 +sub-control100890,control,harvard48,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_harvard48_correlation_matrix.mat,1,9400,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_harvard48_features_timeseries.mat,1,46264,1,1 +sub-control100890,control,kmeans100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_kmeans100_correlation_matrix.mat,1,40184,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_kmeans100_features_timeseries.mat,1,96184,1,1 +sub-control100890,control,schaefer100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_schaefer100_correlation_matrix.mat,1,40184,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_schaefer100_features_timeseries.mat,1,96184,1,1 +sub-control100890,control,ward100,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_ward100_correlation_matrix.mat,1,40184,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control100890\sub-control100890_ward100_features_timeseries.mat,1,96184,1,1 +sub-control3351,control,AAL116,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_AAL116_correlation_matrix.mat,1,107832,C:\Documents\All_github_repo\BrainGraphRL\dataset\ppmi_graphs\ppmi_v2\ppmi\sub-control3351\sub-control3351_AAL116_features_timeseries.mat,1,195064,1,1 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sha256:16708b16afd1300849c1a3baad372f741bd7d6a3cc3d2ada8ae082060f1363c6 +size 23738 diff --git a/metadata/clinical_spec.yaml b/metadata/clinical_spec.yaml new file mode 100644 index 0000000000000000000000000000000000000000..2492446ccab57a34783dc0d912491a3791978a29 --- /dev/null +++ b/metadata/clinical_spec.yaml @@ -0,0 +1,41 @@ +version: 1 +phenotypes: + MoCA_total: + match: ["moca", "montreal cognitive", "moca_total"] + range: [0, 30] + UPDRS3_total: + match: ["updrs iii", "mds-updrs3", "mdsupdrs3", "updrs3_total"] + range: [0, 132] + HY_stage: + match: ["hoehn", "yahr", "hy_stage"] + range: [0, 5] + UPSIT: + match: ["upsit", "smell", "olfactory"] + range: [0, 40] + RBDSQ: + match: ["rbdsq", "rbd questionnaire"] + range: [0, 13] + ESS: + match: ["epworth", "ess"] + range: [0, 24] + GDS15: + match: ["gds", "gds15"] + range: [0, 15] + SCOPA_AUT: + match: ["scopa", "autonomic"] + range: [0, 69] + SDMT: + match: ["sdmt"] + range: [0, 110] + JLO: + match: ["judgment of line", "jlo"] + range: [0, 30] + SFT: + match: ["semantic fluency", "sft", "animal naming"] + range: [0, 60] + LNS: + match: ["letter-number sequencing", "lns"] + range: [0, 21] +visit_fields: + label_like: ["event_id", "visit", "pag_name"] + date_like: ["infodt", "examdt", "visitdt", "date"] \ No newline at end of file diff --git a/metadata/excluded_subjects.tsv b/metadata/excluded_subjects.tsv new file mode 100644 index 0000000000000000000000000000000000000000..091d6dcdfc1a191f272d3e7688cbe4a9c44ca9fc --- /dev/null +++ b/metadata/excluded_subjects.tsv @@ -0,0 +1,15 @@ +participant_id group reason_code reason_detail source +sub-prodromal103857 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal120622 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal146573 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal40737 prodromal short_timeseries only 10 time slots author_update_2025-08-17 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0000000000000000000000000000000000000000..091d6dcdfc1a191f272d3e7688cbe4a9c44ca9fc --- /dev/null +++ b/metadata/exclusions.tsv @@ -0,0 +1,15 @@ +participant_id group reason_code reason_detail source +sub-prodromal103857 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal120622 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal146573 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal40737 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal52874 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal55560 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal56680 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal58027 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal58680 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal59390 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal59483 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal59503 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal71658 prodromal short_timeseries only 10 time slots author_update_2025-08-17 +sub-prodromal75422 prodromal short_timeseries only 10 time slots author_update_2025-08-17 diff --git a/metadata/idmap.tsv b/metadata/idmap.tsv new file mode 100644 index 0000000000000000000000000000000000000000..88c7c16ea4dc776ca2ebbc71f38a724424edfa8f --- /dev/null +++ b/metadata/idmap.tsv @@ -0,0 +1,196 @@ +participant_id group included present_on_disk patno legacy_ids source_demographics source_status +sub-control100890 control 1 1 100890 "[""PATNO:100890""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-control3351 control 1 1 3351 "[""PATNO:3351""]" Demographics_08Apr2025.csv 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Participant_Status_16Apr2025.csv +sub-patient3825 patient 1 1 3825 "[""PATNO:3825""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3826 patient 1 1 3826 "[""PATNO:3826""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3828 patient 1 1 3828 "[""PATNO:3828""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3829 patient 1 1 3829 "[""PATNO:3829""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3830 patient 1 1 3830 "[""PATNO:3830""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3831 patient 1 1 3831 "[""PATNO:3831""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3832 patient 1 1 3832 "[""PATNO:3832""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3834 patient 1 1 3834 "[""PATNO:3834""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3835 patient 1 1 3835 "[""PATNO:3835""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3838 patient 1 1 3838 "[""PATNO:3838""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3863 patient 1 1 3863 "[""PATNO:3863""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3869 patient 1 1 3869 "[""PATNO:3869""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient3870 patient 1 1 3870 "[""PATNO:3870""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4005 patient 1 1 4005 "[""PATNO:4005""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4011 patient 1 1 4011 "[""PATNO:4011""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4019 patient 1 1 4019 "[""PATNO:4019""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4020 patient 1 1 4020 "[""PATNO:4020""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4021 patient 1 1 4021 "[""PATNO:4021""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4024 patient 1 1 4024 "[""PATNO:4024""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4026 patient 1 1 4026 "[""PATNO:4026""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4029 patient 1 1 4029 "[""PATNO:4029""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4030 patient 1 1 4030 "[""PATNO:4030""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4034 patient 1 1 4034 "[""PATNO:4034""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4035 patient 1 1 4035 "[""PATNO:4035""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient40366 patient 1 1 40366 "[""PATNO:40366""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4037 patient 1 1 4037 "[""PATNO:4037""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient4038 patient 1 1 4038 "[""PATNO:4038""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient40533 patient 1 1 40533 "[""PATNO:40533""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient40534 patient 1 1 40534 "[""PATNO:40534""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient50485 patient 1 1 50485 "[""PATNO:50485""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient50901 patient 1 1 50901 "[""PATNO:50901""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient51632 patient 1 1 51632 "[""PATNO:51632""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient51731 patient 1 1 51731 "[""PATNO:51731""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient52678 patient 1 1 52678 "[""PATNO:52678""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient53060 patient 1 1 53060 "[""PATNO:53060""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient55395 patient 1 1 55395 "[""PATNO:55395""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient55468 patient 1 1 55468 "[""PATNO:55468""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-patient70463 patient 1 1 70463 "[""PATNO:70463""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal101523 prodromal 1 1 101523 "[""PATNO:101523""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal101956 prodromal 1 1 101956 "[""PATNO:101956""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal110218 prodromal 1 1 110218 "[""PATNO:110218""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal114198 prodromal 1 1 114198 "[""PATNO:114198""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal14426 prodromal 1 1 14426 "[""PATNO:14426""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal16644 prodromal 1 1 16644 "[""PATNO:16644""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal40360 prodromal 1 1 40360 "[""PATNO:40360""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal40451 prodromal 1 1 40451 "[""PATNO:40451""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal50110 prodromal 1 1 50110 "[""PATNO:50110""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal50143 prodromal 1 1 50143 "[""PATNO:50143""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal50172 prodromal 1 1 50172 "[""PATNO:50172""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal50222 prodromal 1 1 50222 "[""PATNO:50222""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal50225 prodromal 1 1 50225 "[""PATNO:50225""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal51302 prodromal 1 1 51302 "[""PATNO:51302""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal51392 prodromal 1 1 51392 "[""PATNO:51392""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal51680 prodromal 1 1 51680 "[""PATNO:51680""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal51689 prodromal 1 1 51689 "[""PATNO:51689""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal52006 prodromal 1 1 52006 "[""PATNO:52006""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal52274 prodromal 1 1 52274 "[""PATNO:52274""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal52275 prodromal 1 1 52275 "[""PATNO:52275""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal52353 prodromal 1 1 52353 "[""PATNO:52353""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal52362 prodromal 1 1 52362 "[""PATNO:52362""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal52432 prodromal 1 1 52432 "[""PATNO:52432""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal54446 prodromal 1 1 54446 "[""PATNO:54446""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal54937 prodromal 1 1 54937 "[""PATNO:54937""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal55984 prodromal 1 1 55984 "[""PATNO:55984""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal56126 prodromal 1 1 56126 "[""PATNO:56126""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal58327 prodromal 1 1 58327 "[""PATNO:58327""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal58916 prodromal 1 1 58916 "[""PATNO:58916""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60006 prodromal 1 1 60006 "[""PATNO:60006""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60024 prodromal 1 1 60024 "[""PATNO:60024""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60033 prodromal 1 1 60033 "[""PATNO:60033""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60035 prodromal 1 1 60035 "[""PATNO:60035""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60036 prodromal 1 1 60036 "[""PATNO:60036""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60040 prodromal 1 1 60040 "[""PATNO:60040""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60041 prodromal 1 1 60041 "[""PATNO:60041""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60043 prodromal 1 1 60043 "[""PATNO:60043""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60044 prodromal 1 1 60044 "[""PATNO:60044""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60070 prodromal 1 1 60070 "[""PATNO:60070""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60073 prodromal 1 1 60073 "[""PATNO:60073""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60074 prodromal 1 1 60074 "[""PATNO:60074""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60075 prodromal 1 1 60075 "[""PATNO:60075""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal60091 prodromal 1 1 60091 "[""PATNO:60091""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal70519 prodromal 1 1 70519 "[""PATNO:70519""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal71097 prodromal 1 1 71097 "[""PATNO:71097""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal72138 prodromal 1 1 72138 "[""PATNO:72138""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal73940 prodromal 1 1 73940 "[""PATNO:73940""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal74375 prodromal 1 1 74375 "[""PATNO:74375""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal75414 prodromal 1 1 75414 "[""PATNO:75414""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal75479 prodromal 1 1 75479 "[""PATNO:75479""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal75492 prodromal 1 1 75492 "[""PATNO:75492""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal85236 prodromal 1 1 85236 "[""PATNO:85236""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-prodromal85242 prodromal 1 1 85242 "[""PATNO:85242""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3101 swedd 1 1 3101 "[""PATNO:3101""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3326 swedd 1 1 3326 "[""PATNO:3326""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3356 swedd 1 1 3356 "[""PATNO:3356""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3384 swedd 1 1 3384 "[""PATNO:3384""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3550 swedd 1 1 3550 "[""PATNO:3550""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3566 swedd 1 1 3566 "[""PATNO:3566""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3573 swedd 1 1 3573 "[""PATNO:3573""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3580 swedd 1 1 3580 "[""PATNO:3580""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3581 swedd 1 1 3581 "[""PATNO:3581""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3582 swedd 1 1 3582 "[""PATNO:3582""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3820 swedd 1 1 3820 "[""PATNO:3820""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3821 swedd 1 1 3821 "[""PATNO:3821""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3836 swedd 1 1 3836 "[""PATNO:3836""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv +sub-swedd3871 swedd 1 1 3871 "[""PATNO:3871""]" Demographics_08Apr2025.csv Participant_Status_16Apr2025.csv diff --git a/metadata/provenance/author_update_2025-08-17.md b/metadata/provenance/author_update_2025-08-17.md new file mode 100644 index 0000000000000000000000000000000000000000..2e0a5f2c4099fd3957146b3e8b64d6a469ddeef4 --- /dev/null +++ b/metadata/provenance/author_update_2025-08-17.md @@ -0,0 +1,73 @@ +# Author Update — PPMI Derivatives (2025-08-17) + +**Summary.** The dataset maintainers reported that **14 prodromal PPMI subjects** had fMRI time-series with **only 10 time slots**; those scans were deemed invalid and **removed**. They also indicated that the dataset was updated to include both the **parcellated images (`ppmi_v2.zip`)** and the **preprocessed images (`Ppmi_Preprocessed_v2.z*`)**. + +For the overall dataset and processing pipeline, see: +- Dataset page (Figshare): +- Paper (arXiv): (PDF: ) + +--- + +## Original note from the maintainers (verbatim) + +> Please note that we have identified 14 subjects in the PPMI (Parkinson's Progression Markers Initiative) dataset, prodromal group, where the time-series images include only 10 time slots. The invalid subjects are: +> +> sub-prodromal103857 +> sub-prodromal120622 +> sub-prodromal146573 +> sub-prodromal40737 +> sub-prodromal52874 +> sub-prodromal55560 +> sub-prodromal56680 +> sub-prodromal58027 +> sub-prodromal58680 +> sub-prodromal59390 +> sub-prodromal59483 +> sub-prodromal59503 +> sub-prodromal71658 +> sub-prodromal75422 +> +> We have removed the invalid images, and updated the dataset by including both the parcellated images (ppmi_v2.zip) and the preprocessed images (Ppmi_Preprocessed_v2.z*). + +--- + +## Structured details + +- **Cohort affected:** PPMI **prodromal** +- **Reason for exclusion:** Time-series length = **10 time slots** (below analysis threshold) +- **Action taken:** Removed these subjects’ images; published updated **parcellated** and **preprocessed** bundles +- **General references:** + - Dataset page (Figshare): + - Paper (arXiv): + +### Subject IDs excluded (n = 14) + +``` + +sub-prodromal103857 +sub-prodromal120622 +sub-prodromal146573 +sub-prodromal40737 +sub-prodromal52874 +sub-prodromal55560 +sub-prodromal56680 +sub-prodromal58027 +sub-prodromal58680 +sub-prodromal59390 +sub-prodromal59483 +sub-prodromal59503 +sub-prodromal71658 +sub-prodromal75422 + +``` + +--- + +## Guidance for consumers of this repository + +- These 14 subjects are listed in `metadata/exclusions.tsv` (reason_code: `short_timeseries`) and are **not included** in the released graph derivatives. +- If you previously downloaded an older copy of the dataset, **refresh** to ensure these subjects are excluded. +- When merging with external phenotype tables, use `participant_id` to avoid re-introducing excluded subjects. + +**Recorded by maintainer:** 2025-08-17 +**Provenance ID:** `author_update_2025-08-17` diff --git a/metadata/provenance/dataset_summary_20250817-081934.yaml b/metadata/provenance/dataset_summary_20250817-081934.yaml new file mode 100644 index 0000000000000000000000000000000000000000..3d9c799d9c8cc2b9b9e03c30018975053103a812 --- /dev/null +++ b/metadata/provenance/dataset_summary_20250817-081934.yaml @@ -0,0 +1,18 @@ +subjects: 195 +atlases: + AAL116: 116 + harvard48: 48 + kmeans100: 100 + schaefer100: 100 + ward100: 100 +datatypes: +- correlation_matrix +- features_timeseries +files: 1952 +total_bytes: 225022338 +timesteps: + AAL116: 211.34 + harvard48: 211.34 + kmeans100: 211.34 + schaefer100: 211.34 + ward100: 211.34 diff --git a/metadata/provenance/source_exclusions.yaml b/metadata/provenance/source_exclusions.yaml new file mode 100644 index 0000000000000000000000000000000000000000..e2233487d0eb0ac4813b0543c134359f9f45df67 --- /dev/null +++ b/metadata/provenance/source_exclusions.yaml @@ -0,0 +1,55 @@ +schema_version: 1 +created: '2025-08-17' +source: + id: author_update_2025-08-17 + type: author_note + description: Authors identified 14 prodromal subjects with only 10 time slots; these + images were removed from the dataset. + stored_at: metadata/provenance/author_update_2025-08-17.md +reason_codes: + short_timeseries: + label: Short time series + detail: Time-series length is 10 time slots (below analysis threshold). +exclusions: +- participant_id: sub-prodromal103857 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal120622 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal146573 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal40737 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal52874 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal55560 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal56680 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal58027 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal58680 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal59390 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal59483 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal59503 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal71658 + group: prodromal + reason_code: short_timeseries +- participant_id: sub-prodromal75422 + group: prodromal + reason_code: short_timeseries diff --git a/metadata/raw/Demographics_08Apr2025.csv b/metadata/raw/Demographics_08Apr2025.csv new file mode 100644 index 0000000000000000000000000000000000000000..20f6df3067742f357460fe69a4a55a578d57a8c3 --- /dev/null +++ b/metadata/raw/Demographics_08Apr2025.csv @@ -0,0 +1,5063 @@ +"REC_ID","PATNO","EVENT_ID","PAG_NAME","INFODT","AFICBERB","ASHKJEW","BASQUE","BIRTHDT","SEX","CHLDBEAR","HOWLIVE","GAYLES","HETERO","BISEXUAL","PANSEXUAL","ASEXUAL","OTHSEXUALITY","HANDED","HISPLAT","RAASIAN","RABLACK","RAHAWOPI","RAINDALS","RANOS","RAWHITE","RAUNKNOWN","ORIG_ENTRY","LAST_UPDATE" 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+110218,1,1,1,1,1,Prodromal,66.1,1,True,True +114198,1,1,1,1,1,Prodromal,59.6,1,True,True diff --git a/participants.json b/participants.json new file mode 100644 index 0000000000000000000000000000000000000000..71cabe5bbb97a138964fc9af8bb2f03878592dd9 --- /dev/null +++ b/participants.json @@ -0,0 +1,142 @@ +{ + "participant_id": { + "Description": "Canonical subject ID (folder name).", + "Type": "string" + }, + "patno": { + "Description": "Stable join key from source cohort.", + "Type": "string", + "Notes": "Optional; may be omitted in public release." + }, + "group": { + "Description": "Cohort group.", + "Type": "string", + "Levels": { + "control": "Healthy control", + "patient": "Parkinson's disease", + "prodromal": "Prodromal/RBD", + "swedd": "SWEDD", + "unknown": "Unknown" + } + }, + "age": { + "Description": "Age at baseline (or first available).", + "Units": "years", + "Type": "number" + }, + "sex": { + "Description": "Biological sex as recorded.", + "Type": "string", + "Levels": { + "M": "Male", + "F": "Female", + "Other": "Other / non-binary / intersex", + "Unknown": "Not available" + } + }, + "site": { + "Description": "Acquisition site / center (not available in your CSVs).", + "Type": "string" + }, + "visits_noninv": { + "Description": "Count of non-invasive assessment visits available (explicit if present, else 1 when graphs exist).", + "Type": "integer", + "Minimum": 0 + }, + "has_noninv": { + "Description": "Indicator that at least one non-invasive visit exists.", + "Type": "integer", + "Levels": { + "0": "No", + "1": "Yes" + } + }, + "included": { + "Description": "Inclusion flag after exclusions.", + "Type": "integer", + "Levels": { + "0": "Excluded", + "1": "Included" + } + }, + "has_graph": { + "Description": "Has at least one parcellation with matrix+timeseries pair.", + "Type": "integer", + "Levels": { + "0": "No", + "1": "Yes" + } + }, + "T1w": { + "Description": "Has T1-weighted anatomical MRI.", + "Type": "integer", + "Levels": { + "0": "No", + "1": "Yes" + } + }, + "fMRI_rest": { + "Description": "Has resting-state fMRI/BOLD.", + "Type": "integer", + "Levels": { + "0": "No", + "1": "Yes" + } + }, + "DWI": { + "Description": "Has diffusion-weighted MRI / DTI.", + "Type": "integer", + "Levels": { + "0": "No", + "1": "Yes" + } + }, + "T2w": { + "Description": "Has T2-weighted MRI.", + "Type": "integer", + "Levels": { + "0": "No", + "1": "Yes" + } + }, + "FLAIR": { + "Description": "Has FLAIR MRI.", + "Type": "integer", + "Levels": { + "0": "No", + "1": "Yes" + } + }, + "DAT_SPECT": { + "Description": "Has DAT-SPECT imaging.", + "Type": "integer", + "Levels": { + "0": "No", + "1": "Yes" + } + }, + "PET": { + "Description": "Has PET imaging.", + "Type": "integer", + "Levels": { + "0": "No", + "1": "Yes" + } + }, + "SWI": { + "Description": "Has SWI MRI.", + "Type": "integer", + "Levels": { + "0": "No", + "1": "Yes" + } + }, + "ASL": { + "Description": "Has ASL MRI.", + "Type": "integer", + "Levels": { + "0": "No", + "1": "Yes" + } + } +} \ No newline at end of file diff --git a/participants.tsv b/participants.tsv new file mode 100644 index 0000000000000000000000000000000000000000..46f61b74dbc41db896b7da3b70b8a078169e1111 --- /dev/null +++ b/participants.tsv @@ -0,0 +1,196 @@ +participant_id patno group age sex site visits_noninv has_noninv included has_graph T1w fMRI_rest DWI T2w FLAIR DAT_SPECT PET SWI ASL +sub-control100890 100890 control 78.08784574631922 M Unknown 10 1 1 1 0 0 0 0 0 0 0 0 0 +sub-control3351 3351 control 67.33608492987535 M Unknown 10 1 1 1 0 0 0 0 0 0 0 0 0 +sub-control3353 3353 control 56.001149920942936 F Unknown 10 1 1 1 0 0 0 0 0 0 0 0 0 +sub-control3361 3361 control 56.16268643435526 F Unknown 10 1 1 1 0 0 0 0 0 0 0 0 0 +sub-control3368 3368 control 53.16741616870983 F Unknown 10 1 1 1 0 0 0 0 0 0 0 0 0 +sub-control3369 3369 control 44.00090350931231 M Unknown 10 1 1 1 0 0 0 0 0 0 0 0 0 +sub-control3389 3389 control 71.50591730151885 M Unknown 10 1 1 1 0 0 0 0 0 0 0 0 0 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