{ "plm_models": { "ESM2-8M": "facebook/esm2_t6_8M_UR50D", "ESM2-35M": "facebook/esm2_t12_35M_UR50D", "ESM2-150M": "facebook/esm2_t30_150M_UR50D", "ESM2-650M": "facebook/esm2_t33_650M_UR50D", "ESM2-3B": "facebook/esm2_t36_3B_UR50D", "ESM2-15B": "facebook/esm2_t48_15B_UR50D", "ESM-1b": "facebook/esm1b_t33_650M_UR50S", "ESM-1v-1": "facebook/esm1v_t33_650M_UR90S_1", "ESM-1v-2": "facebook/esm1v_t33_650M_UR90S_2", "ESM-1v-3": "facebook/esm1v_t33_650M_UR90S_3", "ESM-1v-4": "facebook/esm1v_t33_650M_UR90S_4", "ESM-1v-5": "facebook/esm1v_t33_650M_UR90S_5", "ProtBert-uniref50": "Rostlab/prot_bert", "ProtBert-bfd": "Rostlab/prot_bert_bfd", "ProtT5-xl-bfd": "Rostlab/prot_t5_xl_bfd", "ProtT5-xl-uniref50": "Rostlab/prot_t5_xl_uniref50", "ProtT5-xxl-uniref50": "Rostlab/prot_t5_xxl_uniref50", "ProtT5-xxl-bfd": "Rostlab/prot_t5_xxl_bfd", "Ankh-base": "ElnaggarLab/ankh-base", "Ankh-large": "ElnaggarLab/ankh-large", "ProSST-4096": "AI4Protein/ProSST-4096", "ProSST-2048": "AI4Protein/ProSST-2048", "ProSST-1024": "AI4Protein/ProSST-1024", "ProSST-512": "AI4Protein/ProSST-512", "ProSST-128": "AI4Protein/ProSST-128", "ProSST-20": "AI4Protein/ProSST-20", "ProPrime-690M": "AI4Protein/Prime_690M", "Deep_base": "AI4Protein/deep_base", "Deep_BPE_50": "AI4Protein/deep_bpe_50", "Deep_BPE_100": "AI4Protein/deep_bpe_100", "Deep_BPE_200": "AI4Protein/deep_bpe_200", "Deep_BPE_400": "AI4Protein/deep_bpe_400", "Deep_BPE_800": "AI4Protein/deep_bpe_800", "Deep_BPE_1600": "AI4Protein/deep_bpe_1600", "Deep_BPE_3200": "AI4Protein/deep_bpe_3200", "Deep_Unigram_50": "AI4Protein/deep_unigram_50", "Deep_Unigram_100": "AI4Protein/deep_unigram_100", "Deep_Unigram_200": "AI4Protein/deep_unigram_200", "Deep_Unigram_400": "AI4Protein/deep_unigram_400", "Deep_Unigram_800": "AI4Protein/deep_unigram_800", "Deep_Unigram_1600": "AI4Protein/deep_unigram_1600", "Deep_Unigram_3200": "AI4Protein/deep_unigram_3200" }, "dataset_configs": { "Demo_Solubility": "data/Demo/Demo_Solubility_HF.json", "DeepET_Topt": "data/DeepET_Topt/DeepET_Topt_HF.json", "DeepET_Topt_AlphaFold2": "data/DeepET_Topt/DeepET_Topt_AlphaFold2_HF.json", "DeepET_Topt_ESMFold": "data/DeepET_Topt/DeepET_Topt_ESMFold_HF.json", "DeepLoc2Multi": "data/DeepLoc2Multi/DeepLoc2Multi_HF.json", "DeepLoc2Multi_AlphaFold2": "data/DeepLoc2Multi/DeepLoc2Multi_AlphaFold2_HF.json", "DeepLocBinary": "data/DeepLocBinary/DeepLocBinary_HF.json", "DeepLocBinary_AlphaFold2": "data/DeepLocBinary/DeepLocBinary_AlphaFold2_HF.json", "DeepLocBinary_ESMFold": "data/DeepLocBinary/DeepLocBinary_ESMFold_HF.json", "DeepLocMulti": "data/DeepLocMulti/DeepLocMulti_HF.json", "DeepLocMulti_AlphaFold2": "data/DeepLocMulti/DeepLocMulti_AlphaFold2_HF.json", "DeepLocMulti_ESMFold": "data/DeepLocMulti/DeepLocMulti_ESMFold_HF.json", "DeepSol": "data/DeepSol/DeepSol_HF.json", "DeepSol_ESMFold": "data/DeepSol/DeepSol_ESMFold_HF.json", "DeepSoluE": "data/DeepSoluE/DeepSoluE_HF.json", "DeepSoluE_ESMFold": "data/DeepSoluE/DeepSoluE_ESMFold_HF.json", "EC": "data/EC/EC_HF.json", "EC_AlphaFold2": "data/EC/EC_AlphaFold2_HF.json", "EC_ESMFold": "data/EC/EC_ESMFold_HF.json", "eSOL": "data/eSOL/eSOL_HF.json", "eSOL_AlphaFold2": "data/eSOL/eSOL_AlphaFold2_HF.json", "eSOL_ESMFold": "data/eSOL/eSOL_ESMFold_HF.json", "FLIP_AAV_des-mut": "data/FLIP_AAV/FLIP_AAV_des-mut_HF.json", "FLIP_AAV_low-vs-high": "data/FLIP_AAV/FLIP_AAV_low-vs-high_HF.json", "FLIP_AAV_mut-des": "data/FLIP_AAV/FLIP_AAV_mut-des_HF.json", "FLIP_AAV_one-vs-rest": "data/FLIP_AAV/FLIP_AAV_one-vs-rest_HF.json", "FLIP_AAV_sampled": "data/FLIP_AAV/FLIP_AAV_sampled_HF.json", "FLIP_AAV_seven-vs-rest": "data/FLIP_AAV/FLIP_AAV_seven-vs-rest_HF.json", "FLIP_AAV_two-vs-rest": "data/FLIP_AAV/FLIP_AAV_two-vs-rest_HF.json", "FLIP_GB1_low-vs-high": "data/FLIP_GB1/FLIP_GB1_low-vs-high_HF", "FLIP_GB1_one-vs-rest": "data/FLIP_GB1/FLIP_GB1_one-vs-rest_HF", "FLIP_GB1_sampled": "data/FLIP_GB1/FLIP_GB1_sampled_HF", "FLIP_GB1_three-vs-rest": "data/FLIP_GB1/FLIP_GB1_three-vs-rest_HF", "FLIP_GB1_two-vs-rest": "data/FLIP_GB1/FLIP_GB1_two-vs-rest_HF.json", "GO_BP": "data/GO_BP/GO_BP_HF.json", "GO_BP_AlphaFold2": "data/GO_BP/GO_BP_AlphaFold2_HF.json", "GO_BP_ESMFold": "data/GO_BP/GO_BP_ESMFold_HF.json", "GO_MF": "data/GO_MF/GO_MF_HF.json", "GO_MF_AlphaFold2": "data/GO_MF/GO_MF_AlphaFold2_HF.json", "GO_MF_ESMFold": "data/GO_MF/GO_MF_ESMFold_HF.json", "GO_CC": "data/GO_CC/GO_CC_HF.json", "GO_CC_AlphaFold2": "data/GO_CC/GO_CC_AlphaFold2_HF.json", "GO_CC_ESMFold": "data/GO_CC/GO_CC_ESMFold_HF.json", "MetalIonBinding": "data/MetalIonBinding/MetalIonBinding_HF.json", "MetalIonBinding_AlphaFold2": "data/MetalIonBinding/MetalIonBinding_AlphaFold2_HF.json", "MetalIonBinding_ESMFold": "data/MetalIonBinding/MetalIonBinding_ESMFold_HF", "PaCRISPR": "data/PaCRISPR/PaCRISPR_HF.json", "PETA_CHS_Sol": "data/PETA_CHS_Sol/PETA_CHS_Sol_HF.json", "PETA_LGK_Sol": "data/PETA_LGK_Sol/PETA_LGK_Sol_HF.json", "PETA_TEM_Sol": "data/PETA_TEM_Sol/PETA_TEM_Sol_HF.json", "ProtSolM": "data/ProtSolM/ProtSolM_HF.json", "ProtSolM_ESMFold": "data/ProtSolM/ProtSolM_ESMFold_HF.json", "SortingSignal": "data/SortingSignal/SortingSignal_HF.json", "SortingSignal_AlphaFold2": "data/SortingSignal/SortingSignal_AlphaFold2_HF.json", "TAPE_Fluorescence": "data/TAPE_Fluorescence/TAPE_Fluorescence_HF.json", "TAPE_Stability": "data/TAPE_Stability/TAPE_Stability_HF.json", "Thermostability": "data/Thermostability/Thermostability_HF.json", "Thermostability_AlphaFold2": "data/Thermostability/Thermostability_AlphaFold2_HF.json", "Thermostability_ESMFold": "data/Thermostability/Thermostability_ESMFold_HF.json" } }