pipelines.json

{
  "bio_summary": {
    "nodes": [
      {
        "id": "q",
        "type": "prompt",
        "text": "${question}"
      },
      {
        "id": "rag",
        "type": "rag",
        "k": 5,
        "from": "q"
      },
      {
        "id": "llm",
        "type": "llm",
        "from": [
          "q",
          "rag"
        ],
        "system": "You are a bioinformatics assistant. Use tools to compute sequence stats when helpful. Provide concise, safe, non-experimental insights."
      }
    ],
    "outputs": [
      "llm"
    ]
  }
}