presets.json

[
  {
    "name": "gc_percent",
    "description": "Compute GC% of a nucleotide sequence.",
    "input_schema": {
      "type": "object",
      "properties": {
        "seq": {
          "type": "string"
        }
      },
      "required": [
        "seq"
      ]
    }
  },
  {
    "name": "tm_wallace",
    "description": "Estimate DNA oligo melting temperature (Wallace rule).",
    "input_schema": {
      "type": "object",
      "properties": {
        "seq": {
          "type": "string"
        }
      },
      "required": [
        "seq"
      ]
    }
  },
  {
    "name": "revcomp",
    "description": "Return reverse complement of a DNA/RNA sequence.",
    "input_schema": {
      "type": "object",
      "properties": {
        "seq": {
          "type": "string"
        }
      },
      "required": [
        "seq"
      ]
    }
  },
  {
    "name": "translate",
    "description": "Translate coding DNA to amino acids.",
    "input_schema": {
      "type": "object",
      "properties": {
        "seq": {
          "type": "string"
        },
        "frame": {
          "type": "integer",
          "description": "0,1,2"
        }
      },
      "required": [
        "seq"
      ]
    }
  },
  {
    "name": "kmer_count",
    "description": "Count k-mers in a nucleotide sequence.",
    "input_schema": {
      "type": "object",
      "properties": {
        "seq": {
          "type": "string"
        },
        "k": {
          "type": "integer"
        }
      },
      "required": [
        "seq",
        "k"
      ]
    }
  },
  {
    "name": "find_orfs",
    "description": "Find ORFs with minimum amino-acid length.",
    "input_schema": {
      "type": "object",
      "properties": {
        "seq": {
          "type": "string"
        },
        "min_aa": {
          "type": "integer"
        }
      },
      "required": [
        "seq"
      ]
    }
  }
]