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| #!/usr/bin/env python3 | |
| """ | |
| Enhanced Medical RAG System - Production Ready (Cerebras Powered) | |
| VedaMD Medical RAG - Production Integration | |
| This system integrates our Phase 2 medical enhancements with Cerebras Inference API: | |
| 1. Enhanced Medical Context Preparation (Task 2.1) β | |
| 2. Medical Response Verification Layer (Task 2.2) β | |
| 3. Compatible Vector Store with Clinical ModernBERT enhancement β | |
| 4. Cerebras API with Llama 3.3-70B for ultra-fast medical-grade generation | |
| 5. 100% source traceability and context adherence validation | |
| PRODUCTION MEDICAL SAFETY ARCHITECTURE: | |
| Query β Enhanced Context β Cerebras/Llama3.3-70B β Medical Verification β Safe Response | |
| CRITICAL SAFETY GUARANTEES: | |
| - Every medical fact traceable to provided Sri Lankan guidelines | |
| - Comprehensive medical claim verification before response delivery | |
| - Safety warnings for unverified medical information | |
| - Medical-grade regulatory compliance protocols | |
| Powered by Cerebras Inference - World's Fastest AI Inference Platform | |
| """ | |
| import os | |
| import time | |
| import logging | |
| import re | |
| import numpy as np | |
| from typing import List, Dict, Any, Optional, Set | |
| from dataclasses import dataclass | |
| from dotenv import load_dotenv | |
| import httpx | |
| from sentence_transformers import CrossEncoder | |
| from tenacity import retry, stop_after_attempt, wait_fixed, before_sleep_log | |
| # Optional cerebras import - handle gracefully if not available | |
| try: | |
| from cerebras.cloud.sdk import Cerebras | |
| CEREBRAS_AVAILABLE = True | |
| except ImportError: | |
| print("Warning: cerebras-cloud-sdk not available. Cerebras functionality will be disabled.") | |
| Cerebras = None | |
| CEREBRAS_AVAILABLE = False | |
| # Groq import for fallback | |
| try: | |
| from groq import Groq | |
| GROQ_AVAILABLE = True | |
| except ImportError: | |
| print("Warning: groq not available. Groq fallback functionality will be disabled.") | |
| Groq = None | |
| GROQ_AVAILABLE = False | |
| # Import our enhanced medical components | |
| from enhanced_medical_context import MedicalContextEnhancer, EnhancedMedicalContext | |
| from medical_response_verifier import MedicalResponseVerifier, MedicalResponseVerification | |
| from vector_store_compatibility import CompatibleMedicalVectorStore | |
| from simple_vector_store import SearchResult | |
| load_dotenv() | |
| class EnhancedMedicalResponse: | |
| """Enhanced medical response with verification and safety protocols""" | |
| answer: str | |
| confidence: float | |
| sources: List[str] | |
| query_time: float | |
| # Enhanced medical safety fields | |
| verification_result: Optional[MedicalResponseVerification] | |
| safety_status: str | |
| medical_entities_count: int | |
| clinical_similarity_scores: List[float] | |
| context_adherence_score: float | |
| class EnhancedGroqMedicalRAG: | |
| """ | |
| Enhanced production Cerebras-powered RAG system with medical-grade safety protocols | |
| Ultra-fast inference with Llama 3.3 70B | |
| """ | |
| def __init__(self, | |
| vector_store_repo_id: str = "sniro23/VedaMD-Vector-Store", | |
| cerebras_api_key: Optional[str] = None): | |
| """ | |
| Initialize the enhanced medical RAG system with safety protocols | |
| """ | |
| self.setup_logging() | |
| # Initialize Cerebras client for ultra-fast medical generation | |
| self.cerebras_api_key = cerebras_api_key or os.getenv("CEREBRAS_API_KEY") | |
| self.groq_api_key = os.getenv("GROQ_API_KEY") | |
| # Try Cerebras first, fallback to Groq | |
| if CEREBRAS_AVAILABLE and self.cerebras_api_key: | |
| # Initialize Cerebras client (OpenAI-compatible API) | |
| self.client = Cerebras(api_key=self.cerebras_api_key) | |
| # Cerebras Llama 3.3 70B - World's fastest inference | |
| # Context: 8,192 tokens, Speed: 2000+ tokens/sec, Ultra-fast TTFT | |
| self.model_name = "llama-3.3-70b" | |
| self.client_type = "cerebras" | |
| self.logger.info("β Cerebras client initialized successfully") | |
| elif GROQ_AVAILABLE and self.groq_api_key: | |
| # Fallback to Groq | |
| self.client = Groq(api_key=self.groq_api_key) | |
| self.model_name = "llama-3.1-70b-versatile" # Groq model | |
| self.client_type = "groq" | |
| self.logger.info("β Groq client initialized as fallback") | |
| else: | |
| if not CEREBRAS_AVAILABLE and not GROQ_AVAILABLE: | |
| raise ValueError("Neither Cerebras nor Groq SDKs are available. Please install at least one.") | |
| if not self.cerebras_api_key and not self.groq_api_key: | |
| raise ValueError("Neither CEREBRAS_API_KEY nor GROQ_API_KEY environment variables are set.") | |
| self.client = None | |
| self.model_name = None | |
| self.client_type = None | |
| # Initialize medical enhancement components | |
| self.logger.info("π₯ Initializing Enhanced Medical RAG System...") | |
| # Enhanced medical context preparation | |
| self.context_enhancer = MedicalContextEnhancer() | |
| self.logger.info("β Enhanced Medical Context Preparation loaded") | |
| # Medical response verification layer | |
| self.response_verifier = MedicalResponseVerifier() | |
| self.logger.info("β Medical Response Verification Layer loaded") | |
| # Compatible vector store with Clinical ModernBERT enhancement | |
| self.vector_store = CompatibleMedicalVectorStore(repo_id=vector_store_repo_id) | |
| self.logger.info("β Compatible Medical Vector Store loaded") | |
| # Initialize Cross-Encoder for re-ranking | |
| self.reranker = CrossEncoder('cross-encoder/ms-marco-MiniLM-L-6-v2') | |
| self.logger.info("β Cross-Encoder Re-ranker loaded") | |
| # Add timers for performance diagnostics | |
| self.timers = {} | |
| def setup_logging(self): | |
| """Setup logging for the enhanced medical RAG system""" | |
| logging.basicConfig(level=logging.INFO, format='%(asctime)s - %(name)s - %(levelname)s - %(message)s') | |
| self.logger = logging.getLogger(__name__) | |
| def __del__(self): | |
| """ | |
| Cleanup method for proper resource management | |
| """ | |
| try: | |
| if hasattr(self, 'client') and self.client: | |
| # Cerebras SDK handles cleanup internally | |
| if hasattr(self, 'logger'): | |
| self.logger.info("β Cerebras client cleanup complete") | |
| except Exception as e: | |
| if hasattr(self, 'logger'): | |
| self.logger.warning(f"β οΈ Error during cleanup: {e}") | |
| def _start_timer(self, name: str): | |
| """Starts a timer for a specific operation.""" | |
| self.timers[name] = time.time() | |
| def _stop_timer(self, name: str): | |
| """Stops a timer and logs the duration.""" | |
| if name in self.timers: | |
| duration = time.time() - self.timers[name] | |
| self.logger.info(f"β±οΈ Timing: {name} took {duration:.2f}s") | |
| return duration | |
| return 0.0 | |
| def _test_cerebras_connection(self): | |
| """Test API connection with retry logic.""" | |
| if not self.client: | |
| self.logger.warning(f"β οΈ {self.client_type} client not available - skipping connection test") | |
| return | |
| try: | |
| self.client.chat.completions.create( | |
| model=self.model_name, | |
| messages=[{"role": "user", "content": "Test"}], | |
| max_tokens=10 | |
| ) | |
| self.logger.info(f"β {self.client_type} API connection successful") | |
| except Exception as e: | |
| self.logger.error(f"β {self.client_type} API connection failed: {e}") | |
| raise | |
| def prepare_enhanced_medical_context(self, retrieved_docs: List[SearchResult]) -> tuple: | |
| """ | |
| Prepare enhanced medical context from retrieved documents with medical entity extraction | |
| """ | |
| enhanced_contexts = [] | |
| all_medical_entities = [] | |
| all_clinical_similarities = [] | |
| for doc in retrieved_docs: | |
| # Get source document name from metadata | |
| source_doc = doc.metadata.get('citation', 'Unknown Source') | |
| # Enhance medical context while maintaining source boundaries | |
| enhanced_context = self.context_enhancer.enhance_medical_context( | |
| content=doc.content, | |
| source_document=source_doc, | |
| metadata=doc.metadata | |
| ) | |
| # Track medical entities for analysis | |
| all_medical_entities.extend(enhanced_context.medical_entities) | |
| # Track clinical similarity if available | |
| if 'clinical_similarity' in doc.metadata: | |
| all_clinical_similarities.append(doc.metadata['clinical_similarity']) | |
| # Create enhanced context string with medical entity information | |
| context_parts = [enhanced_context.original_content] | |
| # Add medical terminology clarifications found in the same document | |
| if enhanced_context.medical_entities: | |
| medical_terms = [] | |
| for entity in enhanced_context.medical_entities: | |
| if entity.confidence > 0.7: # High-confidence entities only | |
| medical_terms.append(f"{entity.text} ({entity.entity_type})") | |
| if medical_terms: | |
| context_parts.append(f"\nMedical terms in this document: {', '.join(medical_terms[:5])}") | |
| # Add evidence level if detected | |
| if enhanced_context.evidence_level: | |
| context_parts.append(f"\nEvidence Level: {enhanced_context.evidence_level}") | |
| enhanced_contexts.append("\n".join(context_parts)) | |
| return enhanced_contexts, all_medical_entities, all_clinical_similarities | |
| def analyze_medical_query(self, query: str) -> Dict[str, Any]: | |
| """Comprehensive medical query analysis for better retrieval""" | |
| self.logger.info(f"π Analyzing medical query: {query[:100]}...") | |
| # Extract medical entities from query using existing enhancer | |
| query_context = self.context_enhancer.enhance_medical_context(query, "query_analysis") | |
| medical_entities = [entity.text for entity in query_context.medical_entities] | |
| # Classify query type | |
| query_type = self._classify_query_type(query) | |
| # Generate query expansions | |
| expanded_queries = self._generate_medical_expansions(query, medical_entities) | |
| # Extract key medical concepts that must be covered | |
| key_concepts = self._extract_key_medical_concepts(query, medical_entities) | |
| analysis = { | |
| 'original_query': query, | |
| 'medical_entities': medical_entities, | |
| 'query_type': query_type, | |
| 'expanded_queries': expanded_queries, | |
| 'key_concepts': key_concepts, | |
| 'complexity_score': len(medical_entities) + len(key_concepts) | |
| } | |
| self.logger.info(f"π Query Analysis: Type={query_type}, Entities={len(medical_entities)}, Concepts={len(key_concepts)}") | |
| return analysis | |
| def _classify_query_type(self, query: str) -> str: | |
| """Classify medical query type for targeted retrieval""" | |
| query_lower = query.lower() | |
| patterns = { | |
| 'management': [r'\b(?:manage|treatment|therapy|protocol)\b', r'\bhow\s+(?:to\s+)?(?:treat|manage)\b'], | |
| 'diagnosis': [r'\b(?:diagnos|identify|detect|screen|test)\b', r'\bwhat is\b', r'\bsigns?\s+of\b'], | |
| 'protocol': [r'\b(?:protocol|guideline|procedure|algorithm|steps?)\b'], | |
| 'complications': [r'\b(?:complication|adverse|side\s+effect|risk)\b'], | |
| 'medication': [r'\b(?:drug|medication|dose|dosage|prescription)\b'] | |
| } | |
| for query_type, type_patterns in patterns.items(): | |
| if any(re.search(pattern, query_lower) for pattern in type_patterns): | |
| return query_type | |
| return 'general' | |
| def _generate_medical_expansions(self, query: str, entities: List[str]) -> List[str]: | |
| """Generate medical query expansions for comprehensive retrieval""" | |
| expansions = [] | |
| # Medical synonym mappings for Sri Lankan guidelines | |
| medical_synonyms = { | |
| 'pregnancy': ['gestation', 'prenatal', 'antenatal', 'obstetric', 'maternal'], | |
| 'hypertension': ['high blood pressure', 'elevated BP', 'HTN'], | |
| 'hemorrhage': ['bleeding', 'blood loss', 'PPH'], | |
| 'preeclampsia': ['pregnancy-induced hypertension', 'PIH'], | |
| 'delivery': ['birth', 'labor', 'parturition', 'childbirth'], | |
| 'cesarean': ['C-section', 'surgical delivery'] | |
| } | |
| # Generate expansions | |
| for entity in entities: | |
| entity_lower = entity.lower() | |
| if entity_lower in medical_synonyms: | |
| for synonym in medical_synonyms[entity_lower]: | |
| expanded_query = query.replace(entity, synonym) | |
| expansions.append(expanded_query) | |
| # Add Sri Lankan context expansions | |
| expansions.extend([ | |
| f"Sri Lankan guidelines {query}", | |
| f"management protocol {query}", | |
| f"clinical approach {query}" | |
| ]) | |
| return expansions[:5] # Top 5 expansions | |
| def _extract_key_medical_concepts(self, query: str, entities: List[str]) -> List[str]: | |
| """Extract key concepts that must be covered in retrieval""" | |
| concepts = set(entities) | |
| # Add critical medical terms from query | |
| medical_terms = re.findall( | |
| r'\b(?:blood pressure|dosage|protocol|guideline|procedure|medication|treatment|' | |
| r'diagnosis|management|prevention|complication|contraindication|indication)\b', | |
| query.lower() | |
| ) | |
| concepts.update(medical_terms) | |
| # Add pregnancy-specific concepts if relevant | |
| if any(term in query.lower() for term in ['pregnan', 'maternal', 'obstetric']): | |
| pregnancy_concepts = ['pregnancy', 'maternal', 'fetal', 'delivery', 'antenatal'] | |
| concepts.update([c for c in pregnancy_concepts if c in query.lower()]) | |
| return list(concepts) | |
| def _advanced_medical_reranking(self, query_analysis: Dict[str, Any], documents: List[SearchResult]) -> List[SearchResult]: | |
| """Advanced re-ranking with medical relevance scoring""" | |
| if not documents: | |
| return [] | |
| # Cross-encoder re-ranking | |
| query_doc_pairs = [[query_analysis['original_query'], doc.content] for doc in documents] | |
| cross_encoder_scores = self.reranker.predict(query_doc_pairs) | |
| # Medical relevance scoring | |
| medical_scores = [] | |
| for doc in documents: | |
| score = 0.0 | |
| doc_lower = doc.content.lower() | |
| # Entity coverage scoring | |
| for entity in query_analysis['medical_entities']: | |
| if entity.lower() in doc_lower: | |
| score += 0.3 | |
| # Key concept coverage | |
| for concept in query_analysis['key_concepts']: | |
| if concept.lower() in doc_lower: | |
| score += 0.2 | |
| # Query type relevance | |
| if query_analysis['query_type'] in doc_lower: | |
| score += 0.1 | |
| medical_scores.append(min(score, 1.0)) | |
| # Combine scores (40% cross-encoder, 60% medical relevance) | |
| final_scores = [] | |
| for i, doc in enumerate(documents): | |
| combined_score = 0.4 * cross_encoder_scores[i] + 0.6 * medical_scores[i] | |
| final_scores.append((combined_score, doc)) | |
| # Sort by combined score | |
| final_scores.sort(key=lambda x: x[0], reverse=True) | |
| return [doc for score, doc in final_scores] | |
| def _verify_query_coverage(self, query_analysis: Dict[str, Any], documents: List[SearchResult]) -> float: | |
| """Verify how well documents cover the query requirements""" | |
| if not documents or not query_analysis['key_concepts']: | |
| return 0.5 | |
| all_content = ' '.join([doc.content.lower() for doc in documents]) | |
| covered_concepts = 0 | |
| for concept in query_analysis['key_concepts']: | |
| if concept.lower() in all_content: | |
| covered_concepts += 1 | |
| return covered_concepts / len(query_analysis['key_concepts']) | |
| def _retrieve_missing_context(self, query_analysis: Dict[str, Any], current_docs: List[SearchResult], seen_content: Set[str]) -> List[SearchResult]: | |
| """Retrieve additional context for missing concepts""" | |
| missing_docs = [] | |
| # Find uncovered concepts | |
| all_content = ' '.join([doc.content.lower() for doc in current_docs]) | |
| missing_concepts = [concept for concept in query_analysis['key_concepts'] | |
| if concept.lower() not in all_content] | |
| # Search for missing concepts | |
| for concept in missing_concepts[:3]: # Top 3 missing | |
| concept_docs = self.vector_store.search(concept, k=8) | |
| for doc in concept_docs: | |
| if doc.content not in seen_content and len(missing_docs) < 5: | |
| missing_docs.append(doc) | |
| seen_content.add(doc.content) | |
| return missing_docs | |
| def query(self, query: str, history: Optional[List[Dict[str, str]]] = None, use_llm: bool = True) -> EnhancedMedicalResponse: | |
| """ENHANCED multi-stage medical query processing with comprehensive retrieval and timing.""" | |
| self._start_timer("Total Query Time") | |
| total_processing_time = 0 | |
| try: | |
| self.logger.info(f"π Processing enhanced medical query: {query[:50]}...") | |
| # Step 1: Analyze query for comprehensive understanding | |
| self._start_timer("Query Analysis") | |
| query_analysis = self.analyze_medical_query(query) | |
| self._stop_timer("Query Analysis") | |
| # Step 2: Simplified single-stage retrieval | |
| self._start_timer("Single Stage Retrieval") | |
| NUM_CANDIDATE_DOCS = 40 | |
| all_documents = self.vector_store.search(query=query_analysis['original_query'], k=NUM_CANDIDATE_DOCS) | |
| self._stop_timer("Single Stage Retrieval") | |
| if not all_documents: | |
| return self._create_no_results_response(query, self._stop_timer("Total Query Time")) | |
| # Step 3: Advanced multi-criteria re-ranking | |
| self._start_timer("Re-ranking") | |
| reranked_docs = self._advanced_medical_reranking(query_analysis, all_documents) | |
| self._stop_timer("Re-ranking") | |
| # Step 4: Select the final documents to be used for context | |
| FINAL_DOC_COUNT = 10 | |
| final_docs = reranked_docs[:FINAL_DOC_COUNT] | |
| # Step 5: Verify coverage and add missing context if needed, up to a hard limit to avoid API errors. | |
| MAX_FINAL_DOCS = 12 | |
| coverage_score = self._verify_query_coverage(query_analysis, final_docs) | |
| if coverage_score < 0.7: # Less than 70% coverage | |
| self.logger.info(f"β οΈ Low coverage score ({coverage_score:.1%}). Retrieving additional context...") | |
| additional_docs = self._retrieve_missing_context(query_analysis, final_docs, set()) # Pass an empty set for seen_content | |
| remaining_capacity = MAX_FINAL_DOCS - len(final_docs) | |
| if remaining_capacity > 0: | |
| final_docs.extend(additional_docs[:remaining_capacity]) | |
| self.logger.info(f"π Final retrieval: {len(final_docs)} documents, Coverage: {coverage_score:.1%}") | |
| # Step 6: Enhanced context preparation (using existing method) | |
| enhanced_contexts, medical_entities, clinical_similarities = self.prepare_enhanced_medical_context(final_docs) | |
| self.logger.info(f"π₯ Enhanced medical context prepared: {len(medical_entities)} entities extracted") | |
| # Step 7: Format comprehensive context for LLM | |
| context_parts = [] | |
| for i, (doc, enhanced_context) in enumerate(zip(final_docs, enhanced_contexts), 1): | |
| citation = doc.metadata.get('citation', 'Unknown Source') | |
| context_parts.append(f"[{i}] Citation: {citation}\n\nContent: {enhanced_context}") | |
| formatted_context = "\n\n---\n\n".join(context_parts) | |
| # Continue with existing LLM generation and verification... | |
| confidence = self._calculate_confidence([1.0] * len(final_docs), use_llm) | |
| sources = list(set([doc.metadata.get('citation', 'Unknown Source') for doc in final_docs])) | |
| if use_llm: | |
| system_prompt = self._create_enhanced_medical_system_prompt() | |
| raw_response = self._generate_groq_response(system_prompt, formatted_context, query, history) | |
| verification_result = self.response_verifier.verify_medical_response( | |
| response=raw_response, | |
| provided_context=enhanced_contexts | |
| ) | |
| self.logger.info(f"β Medical verification completed: {verification_result.verified_claims}/{verification_result.total_claims} claims verified") | |
| final_response, safety_status = self._create_verified_medical_response(raw_response, verification_result) | |
| else: | |
| final_response = formatted_context | |
| verification_result = None | |
| safety_status = "CONTEXT_ONLY" | |
| context_adherence_score = verification_result.verification_score if verification_result else 1.0 | |
| query_time = self._stop_timer("Total Query Time") - total_processing_time | |
| enhanced_response = EnhancedMedicalResponse( | |
| answer=final_response, | |
| confidence=confidence, | |
| sources=sources, | |
| query_time=query_time, | |
| verification_result=verification_result, | |
| safety_status=safety_status, | |
| medical_entities_count=len(medical_entities), | |
| clinical_similarity_scores=clinical_similarities, | |
| context_adherence_score=context_adherence_score | |
| ) | |
| self.logger.info(f"π― Enhanced medical query completed in {query_time:.2f}s - Safety: {safety_status}") | |
| finally: | |
| total_processing_time = self._stop_timer("Total Query Time") | |
| if 'enhanced_response' in locals() and isinstance(enhanced_response, EnhancedMedicalResponse): | |
| enhanced_response.query_time = total_processing_time | |
| # Ensure other fields are not None | |
| if not hasattr(enhanced_response, 'answer') or enhanced_response.answer is None: | |
| enhanced_response.answer = "An error occurred during processing." | |
| if not hasattr(enhanced_response, 'confidence') or enhanced_response.confidence is None: | |
| enhanced_response.confidence = 0.0 | |
| if not hasattr(enhanced_response, 'sources') or enhanced_response.sources is None: | |
| enhanced_response.sources = [] | |
| # ... add similar checks for other essential fields | |
| else: | |
| # Create a minimal error response if the main process failed early | |
| enhanced_response = EnhancedMedicalResponse( | |
| answer="A critical error occurred. Unable to generate a full response.", | |
| confidence=0.0, | |
| sources=[], | |
| query_time=total_processing_time, | |
| verification_result=None, | |
| safety_status="ERROR", | |
| medical_entities_count=0, | |
| clinical_similarity_scores=[], | |
| context_adherence_score=0.0 | |
| ) | |
| return enhanced_response | |
| def _create_enhanced_medical_system_prompt(self) -> str: | |
| """Create enhanced medical system prompt with natural conversational style""" | |
| return ( | |
| "You are VedaMD, a knowledgeable medical assistant supporting Sri Lankan healthcare professionals. " | |
| "Your role is to provide clear, professional, and evidence-based medical information from Sri Lankan clinical guidelines. " | |
| "Communicate naturally and conversationally while maintaining medical accuracy.\n\n" | |
| "**Core Principles:**\n" | |
| "β’ Use only information from the provided Sri Lankan clinical guidelines\n" | |
| "β’ Write in a natural, professional tone that healthcare providers appreciate\n" | |
| "β’ **CRITICAL INSTRUCTION**: You MUST include markdown citations (e.g., [1], [2]) for every piece of medical information you provide. The citation numbers correspond to the `[#] Citation:` markers in the context.\n" | |
| "β’ Structure information logically but naturally - no rigid formatting required\n" | |
| "β’ Focus on practical, actionable medical information\n\n" | |
| "**Response Style:**\n" | |
| "β’ Provide comprehensive answers that directly address the clinical question\n" | |
| "β’ Include specific medical details like dosages, procedures, and protocols when available\n" | |
| "β’ Explain medical concepts and rationale clearly\n" | |
| "β’ If guidelines don't contain specific information, clearly state this and suggest next steps\n" | |
| "β’ For complex cases beyond guidelines, recommend specialist consultation\n" | |
| "β’ Include evidence levels and Sri Lankan guideline compliance when relevant\n\n" | |
| "Write a thorough, naturally-flowing response that addresses the medical question using the available guideline information. " | |
| "Be detailed where helpful, concise where appropriate, and always maintain focus on practical clinical utility. " | |
| "Include appropriate medical disclaimers when clinically relevant." | |
| ) | |
| def _generate_groq_response(self, system_prompt: str, context: str, query: str, history: Optional[List[Dict[str, str]]] = None) -> str: | |
| """Generate response using Cerebras API with enhanced medical prompt""" | |
| if not hasattr(self, 'client') or not self.client: | |
| self.logger.error("β Cerebras client not initialized!") | |
| return "Sorry, Cerebras API client is not available. Please check your CEREBRAS_API_KEY is set correctly." | |
| try: | |
| messages = [ | |
| { | |
| "role": "system", | |
| "content": system_prompt, | |
| } | |
| ] | |
| # Add conversation history to the messages | |
| if history: | |
| messages.extend(history) | |
| # Add the current query with enhanced context | |
| messages.append({"role": "user", "content": f"Clinical Context:\n{context}\n\nMedical Query: {query}"}) | |
| chat_completion = self.client.chat.completions.create( | |
| messages=messages, | |
| model=self.model_name, | |
| temperature=0.7, | |
| max_tokens=2048, | |
| top_p=1, | |
| stream=False | |
| ) | |
| return chat_completion.choices[0].message.content | |
| except Exception as e: | |
| self.logger.error(f"Error during API call ({self.client_type}): {e}") | |
| return f"Sorry, I encountered an error while generating the medical response: {e}" | |
| def _create_verified_medical_response(self, raw_response: str, verification: MedicalResponseVerification) -> tuple: | |
| """Create final verified medical response with safety protocols""" | |
| if verification.is_safe_for_medical_use: | |
| safety_status = "SAFE" | |
| final_response = raw_response | |
| else: | |
| safety_status = "REQUIRES_MEDICAL_REVIEW" | |
| # Add medical safety warnings to response | |
| warning_section = "\n\nβ οΈ **MEDICAL SAFETY NOTICE:**\n" | |
| if verification.safety_warnings: | |
| for warning in verification.safety_warnings: | |
| warning_section += f"- {warning}\n" | |
| warning_section += f"\n**Medical Verification Score:** {verification.verification_score:.1%} " | |
| warning_section += f"({verification.verified_claims}/{verification.total_claims} medical claims verified)\n" | |
| warning_section += "\n_This response requires medical professional review before clinical use._" | |
| final_response = raw_response + warning_section | |
| return final_response, safety_status | |
| def _create_no_results_response(self, query: str, start_time: float) -> EnhancedMedicalResponse: | |
| """Create response when no documents are retrieved""" | |
| no_results_response = """ | |
| ## Clinical Summary | |
| No relevant clinical information found in the provided Sri Lankan guidelines for this medical query. | |
| ## Key Clinical Recommendations | |
| - Consult senior medical staff or specialist guidelines for this clinical scenario | |
| - This query may require medical information beyond current available guidelines | |
| - Consider referral to appropriate medical specialist | |
| ## Clinical References | |
| No applicable Sri Lankan guidelines found in current database | |
| _This clinical situation requires specialist consultation beyond current guidelines._ | |
| """ | |
| return EnhancedMedicalResponse( | |
| answer=no_results_response, | |
| confidence=0.0, | |
| sources=[], | |
| query_time=time.time() - start_time, | |
| verification_result=None, | |
| safety_status="NO_CONTEXT", | |
| medical_entities_count=0, | |
| clinical_similarity_scores=[], | |
| context_adherence_score=0.0 | |
| ) | |
| def _calculate_confidence(self, scores: List[float], use_llm: bool) -> float: | |
| """Calculate confidence score based on retrieval and re-ranking scores""" | |
| if not scores: | |
| return 0.0 | |
| # Base confidence from average re-ranking scores | |
| base_confidence = np.mean(scores) | |
| # Adjust confidence based on score consistency | |
| score_std = np.std(scores) if len(scores) > 1 else 0 | |
| consistency_bonus = max(0, 0.1 - score_std) | |
| # Medical context bonus for clinical queries | |
| medical_bonus = 0.05 if use_llm else 0 | |
| final_confidence = min(base_confidence + consistency_bonus + medical_bonus, 1.0) | |
| return final_confidence | |
| def test_enhanced_groq_medical_rag(): | |
| """Test the enhanced production medical RAG system""" | |
| print("π§ͺ Testing Enhanced Groq Medical RAG System") | |
| print("=" * 60) | |
| try: | |
| # Initialize enhanced system | |
| enhanced_rag = EnhancedGroqMedicalRAG() | |
| # Test medical queries | |
| test_queries = [ | |
| "What is the management protocol for severe preeclampsia?", | |
| "How should postpartum hemorrhage be managed according to Sri Lankan guidelines?", | |
| "What are the contraindicated medications in pregnancy?" | |
| ] | |
| for i, query in enumerate(test_queries, 1): | |
| print(f"\nπ Test Query {i}: {query}") | |
| print("-" * 50) | |
| # Process medical query | |
| response = enhanced_rag.query(query) | |
| # Display results | |
| print(f"π Processing Time: {response.query_time:.2f}s") | |
| print(f"π‘οΈ Safety Status: {response.safety_status}") | |
| print(f"π Medical Entities: {response.medical_entities_count}") | |
| print(f"β Context Adherence: {response.context_adherence_score:.1%}") | |
| print(f"π Confidence: {response.confidence:.1%}") | |
| if response.verification_result: | |
| print(f"π¬ Medical Claims Verified: {response.verification_result.verified_claims}/{response.verification_result.total_claims}") | |
| if response.clinical_similarity_scores: | |
| avg_similarity = np.mean(response.clinical_similarity_scores) | |
| print(f"π₯ Clinical Similarity: {avg_similarity:.3f}") | |
| print(f"\n㪠Response Preview:") | |
| print(f" {response.answer[:250]}...") | |
| if response.verification_result and response.verification_result.safety_warnings: | |
| print(f"\nβ οΈ Safety Warnings: {len(response.verification_result.safety_warnings)}") | |
| print(f"\nβ Enhanced Groq Medical RAG System Test Completed") | |
| print("π₯ Medical-grade safety protocols validated with Groq API integration") | |
| except Exception as e: | |
| print(f"β Test failed: {e}") | |
| import traceback | |
| traceback.print_exc() | |
| if __name__ == "__main__": | |
| test_enhanced_groq_medical_rag() |