'''
**OUT OF DATE**
Script to grab classification data as well as sequences from completeCRISPRs.txt

Author: Jay Turnsek
'''

MIN_SIZE = 4000  # Minimum size of a CRISPR before we take it
iFile = open('completeCRISPRs.txt', 'r')
oFile = open('CRISPR_' + str(MIN_SIZE) + '_catagorized.csv', 'w')
labelFile = open('CRISPR_labels_' + str(MIN_SIZE) + '.csv', 'w')  # File for the labels. No idea if this will be handy, but why not save it?

CRISPR = ''

# Types parsed by hand, this is out of date.
types = {
    "Fusobacterium nucleatum subsp. animalis 7_1": "Type I-B",
    "Aggregatibacter actinomycetemcomitans D7S-1": "Type I-C",
    "Fusobacterium nucleatum subsp. vincentii 3_1_27": "Type II-A",
    "Pseudomonas aeruginosa PACS2 chromosome": "Type I-F",
    "Streptococcus suis 05HAS68": "Type II-C",
    "Campylobacter jejuni subsp. jejuni CG8421": "Type II-C",
    "Verrucomicrobium spinosum DSM 4136": "Type III-B",
    "Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20": "Type I-E",
    "Mycobacterium tuberculosis W-148": "Type III-A",
    "Hydrogenobaculum sp. 3684": "Type I-B",
    "Hydrogenobaculum sp. SHO": "Type I-B",
    "Pseudomonas aeruginosa 19BR chromosome": "Type I-C",
    "Pseudomona aeruginosa 213BR chromosome": "Type I-C",
    "Halobiforma lacisalsi AJ5 plasmid pHLAJ5I": "Type I-B",
    "Halobacterium sp. DL1 plasmid": "Type I-B",
    "Halobacterium sp. DL1": "Type I-B",
    "Opitutaceae bacterium TAV5": "Type V-B",
    "Niabella soli DSM 19437": "Type II-C",
    "Sulfolobus islandicus M.16.2 chromosome": "Type I-A",
    "Sulfolobus islandicus M.16.40 chromosome": "Type I-A",
    "Sulfolobus islandicus M.16.41 chromosome": "Type I-A",
    "Sulfolobus islandicus M.16.47 chromosome": "Type I-A",
    "Serratia plymuthica PRI-2C": "Type I-F",
    "Streptomyces globisporus C-1027 plasmid SGLP1": "Type I-C",
    "Escherichia coli str. K-12 substr. MG1655 strain K-12": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. Levine 1": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. Levine 15": "Type I-E",
    "Pseudomonas aeruginosa SJTD-1": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM 21550": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM 22513": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM 21538": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM 22425": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM N18486": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM N1543": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM 22462": "Type I-E",
    "Escherichia coli str. K-12 substr. MG1655 strain K-12 chromosome": "Type I-E",
    "Streptococcus pyogenes HKU QMH11M0907901 chromosome": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. 77-1427": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_0968": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Gallinarum str. 9184": "Type I-E",
    "Streptococcus suis YB51": "Type II-C",
    "Bacteroidales bacterium CF": "Type II-C",
    "Synechocystis sp. PCC 6714": "Type III-B",
    "Synechocystis sp. PCC 6714 plasmid pSYLA": "Type III-B",
    "Synechocystis sp. PCC 6714 plasmid pSYLB": "Type I-A",
    "Salmonella enterica subsp. enterica serovar Newport str. WA_14882": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Agona str. 460004 2-1": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg str. SARA35": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. SARA13": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Thompson str. ATCC 8391": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Tennessee str. TXSC_TXSC08-19": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Sloterdijk str. ATCC 15791": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 11511": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Minnesota str. ATCC 49284": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Muenster str. 0315 strain 315": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Inverness str. ATCC 10720": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Albany str. ATCC 51960": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. ATCC BAA-1592": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Bredeney str. CFSAN001080": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 strain SARB61": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Agona str. 392869-2": "Type I-E",
    "Escherichia coli str. K-12 substr. MC4100 complete genome": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002064": "Type I-E",
    "Pasteurella multocida subsp. multocida str. HB03": "Type II-C",
    "Erwinia amylovora LA637 chromosome VII": "Type I-E",
    "Barnesiella viscericola DSM 18177": "Type II-C",
    "Thermococcus sp. ES1": "Type I-B",
    "Chania multitudinisentens RB-25": "Type I-F",
    "Mannheimia varigena USDA-ARS-USMARC-1296": "Type I-C",
    "Mannheimia varigena USDA-ARS-USMARC-1388": "Type I-C",
    "Mannheimia varigena USDA-ARS-USMARC-1312": "Type I-C",
    "Bibersteinia trehalosi USDA-ARS-USMARC-190": "Type I-C",
    "Corynebacterium falsenii DSM 44353 strain BL 8171": "Type I-E",
    "Corynebacterium casei LMG S-19264": "Type I-E",
    "Listeria monocytogenes WSLC1001": "Type II-A",
    "Sulfurospirillum multivorans DSM 12446": "Type I-B",
    "Bifidobacterium breve NCFB 2258": "Type I-C",
    "Bifidobacterium breve S27": "Type I-C",
    "Mycobacterium tuberculosis HKBS1": "Type III-A",
    "Mycobacterium tuberculosis BT2": "Type III-A",
    "Mycobacterium tuberculosis BT1": "Type III-A",
    "Mycobacterium tuberculosis CCDC5180": "Type III-A",
    "Granulibacter bethesdensis CGDNIH4": "Type I-E",
    "Campylobacter coli RM4661": "Type II-C",
    "Thermococcus nautili strain 30-1": "Type I-B",
    "Hafnia alvei FB1": "Type I-F",
    "Paenibacillus polymyxa SQR-21": "Type I-C",
    "Trueperella pyogenes strain TP6375": "Type I-E",
    "Castellaniella defragrans 65Phen complete genome": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120005": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110361": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110360": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110357": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110356": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120002": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110354": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120008": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110221": "Type I-E",
    "Klebsiella michiganensis strain HKOPL1": "Type I-F",
    "Rubrobacter radiotolerans strain RSPS-4": "Type I-C",
    "Bifidobacterium animalis strain RH": "Type I-U",
    "Klebsiella pneumoniae subsp. pneumoniae KPNIH27": "Type I-E",
    "Pectobacterium atrosepticum strain JG10-08": "Type I-F",
    "Halomonas campaniensis strain LS21": "Type I-F",
    "Streptococcus equi subsp. zooepidemicus CY": "Type I-C",
    "Mycobacterium tuberculosis K": "Type III-A",
    "Salmonella bongori serovar 48:z41:-- str. RKS3044": "Type I-E",
    "Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299": "Type I-C",
    "Mucinivorans hirudinis complete genome": "Type II-C",
    "Escherichia coli KLY": "Type I-E",
    "Palaeococcus pacificus DY20341": "Type I-B",
    "Klebsiella pneumoniae subsp. pneumoniae PittNDM01": "Type I-E",
    "Thermodesulfobacterium commune DSM 2178": "Type I-A",
    "Riemerella anatipestifer CH3": "Type II-C",
    "Campylobacter iguaniorum strain 1485E": "Type I-B",
    "Flavobacterium psychrophilum strain CSF259-93": "Type II-C",
    "Actinobacillus suis ATCC 33415": "Type II-C",
    "Corynebacterium imitans strain DSM 44264": "Type I-U",
    "Moraxella catarrhalis strain 25240": "Type I-F",
    "Vibrio vulnificus strain 93U204": "Type I-F",
    "Corynebacterium ureicelerivorans strain IMMIB RIV-230": "Type I-E",
    "Yersinia pseudotuberculosis strain ATCC 6904": "Type I-F",
    "Pasteurella multocida strain ATCC 43137": "Type I-F",
    "Providencia stuartii strain ATCC 33672": "Type I-F",
    "Flavobacterium psychrophilum FPG101": "Type II-C",
    "Paenibacillus durus strain DSM 1735": "Type I-C",
    "Lactobacillus salivarius strain JCM1046": "Type III-A",
    "Paenibacillus borealis strain DSM 13188": "Type I-C",
    "Paenibacillus stellifer strain DSM 14472": "Type I-C",
    "Campylobacter fetus subsp. venerealis 97/608": "Type III-D",
    "Streptomyces glaucescens strain GLA.O plasmid pSglau1": "Type I-E",
    "Methanobacterium formicicum strain BRM9": "Type I-B",
    "Listeria ivanovii subsp. londoniensis strain WSLC 30151": "Type I-B",
    "Moraxella catarrhalis strain 25239": "Type I-F",
    "Flavobacterium psychrophilum strain 950106-1/1": "Type II-C",
    "Fervidobacterium islandicum strain AW-1": "Type I-B",
    "Corynebacterium ulcerans strain 210931": "Type I-E",
    "Corynebacterium ulcerans strain 210932": "Type I-E",
    "Corynebacterium ulcerans strain 05146": "Type I-E",
    "Methylomonas denitrificans strain FJG1": "Type I-E",
    "Geoglobus acetivorans strain SBH6": "Type I-B",
    "Clostridium baratii str. Sullivan": "Type I-B",
    "Escherichia coli ER2796": "Type I-E",
    "Pseudomonas parafulva strain CRS01-1": "Type I-F",
    "Parvimonas micra strain KCOM 1535": "Type II-A",
    "Bifidobacterium kashiwanohense PV20-2": "Type I-C",
    "Bifidobacterium pseudolongum PV8-2": "Type I-U",
    "Candidatus Methanoplasma termitum strain MpT1": "Type V-A",
    "Actinobacillus equuli subsp. equuli strain 19392": "Type I-F",
    "Clostridium pasteurianum DSM 525 = ATCC 6013": "Type I-B",
    "Halocynthiibacter arcticus strain PAMC 20958": "Type I-C",
    "Coriobacteriaceae bacterium 68-1-3": "Type I-C",
    "Streptomyces sp. 769": "Type I-B",
    "Streptomyces sp. 769 plasmid pSGZL": "Type I-E",
    "Dickeya zeae EC1": "Type I-E",
    "Trueperella pyogenes TP8": "Type I-E",
    "Staphylococcus hyicus strain ATCC 11249": "Type II-C",
    "Bifidobacterium animalis subsp. lactis KLDS2.0603": "Type I-U",
    "Campylobacter sp. RM16704": "Type II-C",
    "Campylobacter subantarcticus LMG 24374": "Type II-C",
    "Campylobacter lari NCTC 11845": "Type II-C",
    "Xanthomonas citri subsp. citri A306": "Type I-C",
    "Bifidobacterium animalis strain A6": "Type I-U",
    "Clostridium botulinum CDC_1436 plasmid pCBG": "Type I-B",
    "Azotobacter chroococcum NCIMB 8003": "Type I-E",
    "Pseudomonas balearica DSM 6083": "Type I-E",
    "Bifidobacterium animalis subsp. lactis strain BF052": "Type I-U",
    "Mannheimia haemolytica USDA-ARS-USMARC-184": "Type I-C",
    "Streptomyces albus strain DSM 41398": "Type I-E",
    "Mycobacterium tuberculosis H37RvSiena": "Type III-A",
    "Geoalkalibacter subterraneus strain Red1": "Type I-C",
    "Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1": "Type IV",
    "Haloarcula sp. CBA1115": "Type I-D",
    "Corynebacterium glutamicum strain B253": "Type I-E",
    "Methanothermobacter sp. CaT2 DNA": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. L-3553": "Type I-E",
    "Thiolapillus brandeum DNA": "Type I-E",
    "Sulfuritalea hydrogenivorans sk43H DNA": "Type II-C",
    "Thermotoga caldifontis AZM44c09 DNA": "Type I-D",
    "Thioploca ingrica DNA": "Type I-B",
    "Burkholderia sp. RPE67 DNA": "Type I-E",
    "Burkholderiales bacterium GJ-E10 DNA": "Type II-C",
    "Mycobacterium tuberculosis str. Kurono DNA": "Type III-A",
    "Chryseobacterium sp. StRB126 DNA": "Type II-C",
    "Raoultella ornithinolytica strain S12": "Type I-E",
    "Streptomyces vietnamensis strain GIM4.0001": "Type I-E",
    "Streptococcus anginosus strain SA1": "Type II-A",
    "Flavobacterium psychrophilum strain V4-24": "Type II-C",
    "Flavobacterium psychrophilum strain V4-33": "Type II-C",
    "Flavobacterium psychrophilum strain V3-5": "Type II-C",
    "Mycobacterium tuberculosis H37Rv": "Type III-A",
    "Streptococcus iniae strain YSFST01-82": "Type II-A",
    "Escherichia coli ECC-1470": "Type I-E",
    "Lactobacillus heilongjiangensis strain DSM 28069": "Type II-A",
    "Thermotoga sp. RQ7": "Type I-B",
    "Bacillus coagulans DSM 1 = ATCC 7050": "Type I-C",
    "Francisella tularensis subsp. novicida D9876": "Type II-B",
    "Corynebacterium singulare strain IBS B52218": "Type I-E",
    "Yersinia frederiksenii Y225": "Type I-F",
    "Yersinia pseudotuberculosis IP 32953": "Type I-F",
    "Yersinia pseudotuberculosis YPIII": "Type I-F",
    "Yersinia pseudotuberculosis strain EP2/+": "Type I-F",
    "Yersinia pseudotuberculosis strain 1": "Type I-F",
    "Yersinia pseudotuberculosis PB1/+": "Type I-F",
    "Yersinia kristensenii strain Y231": "Type I-F",
    "Yersinia pseudotuberculosis str. PA3606": "Type I-F",
    "Bacillus coagulans strain HM-08": "Type I-C",
    "Pseudomonas sp. MRSN12121": "Type I-F",
    "Alteromonas australica strain DE170": "Type I-F",
    "Propionibacterium freudenreichii subsp. freudenreichii strain DSM 20271": "Type I-U",
    "Salmonella enterica subsp. enterica serovar Anatum str. CDC 06-0532": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1903": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1899": "Type I-E",
    "Amycolatopsis orientalis strain B-37": "Type I-E",
    "Xanthomonas oryzae pv. oryzae PXO86": "Type I-C",
    "Paenibacillus sp. IHBB 10380": "Type I-B",
    "Streptomyces lydicus A02": "Type I-E",
    "Xenorhabdus nematophila AN6/1 genome assembly XNC2": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Infantis genome assembly SINFA": "Type I-E",
    "Aliivibrio wodanis genome assembly AWOD1": "Type I-F",
    "Moritella viscosa genome assembly MVIS1": "Type I-F",
    "Elizabethkingia miricola strain BM10": "Type II-C",
    "Lactobacillus helveticus strain KLDS1.8701": "Type I-E",
    "Paenibacillus beijingensis strain DSM 24997": "Type I-C",
    "Xanthomonas citri subsp. citri strain UI6": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1175": "Type I-E",
    "Mannheimia haemolytica strain 89010807N": "Type I-C",
    "Mannheimia haemolytica strain 89010807N lktA-": "Type I-C",
    "Pseudomonas chlororaphis strain PCL1606": "Type I-F",
    "Bifidobacterium angulatum strain GT102": "Type II-A",
    "Campylobacter fetus subsp. venerealis str. 84-112": "Type III-D",
    "Magnetospira sp. QH-2 chromosome": "Type I-C",
    "Xenorhabdus poinarii str. G6 chromosome": "Type I-E",
    "Xenorhabdus doucetiae str. FRM16 chromosome": "Type I-E",
    "Escherichia coli VR50": "Type I-E",
    "Janthinobacterium sp. B9-8": "Type I-E",
    "Methanococcoides methylutens MM1": "Type I-B",
    "Sneathia sp. Sn35": "Type V-A",
    "Pasteurella multocida subsp. multocida OH4807": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2011K-0870": "Type I-E",
    "Escherichia coli K-12 strain ER3454": "Type I-E",
    "Spirosoma radiotolerans strain DG5A": "Type I-B",
    "Escherichia coli K-12 strain ER3440": "Type I-E",
    "Escherichia coli K-12 strain ER3476": "Type I-E",
    "Escherichia coli K-12 strain ER3475": "Type I-E",
    "Corynebacterium camporealensis strain DSM 44610": "Type II-C",
    "Sulfurovum lithotrophicum strain ATCC BAA-797": "Type II-C",
    "Myxococcus fulvus 124B02": "Type I-C",
    "Streptomyces xiamenensis strain 318": "Type I-E",
    "Paenibacillus durus ATCC 35681": "Type I-C",
    "Serratia fonticola strain DSM 4576": "Type I-F",
    "Lactobacillus helveticus strain MB2-1": "Type I-B",
    "Geoglobus ahangari strain 234": "Type I-B",
    "Sedimenticola thiotaurini strain SIP-G1": "Type II-C",
    "Dehalococcoides sp. UCH007 DNA": "Type I-E",
    "Streptomyces sp. CNQ-509": "Type I-E",
    "Halanaeroarchaeum sulfurireducens strain HSR2": "Type I-B",
    "Corynebacterium mustelae strain DSM 45274": "Type I-E",
    "Corynebacterium uterequi strain DSM 45634": "Type I-E",
    "Chryseobacterium gallinarum strain DSM 27622": "Type II-C",
    "Bifidobacterium angulatum DSM 20098 = JCM 7096 DNA": "Type I-E",
    "Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 DNA": "Type I-E",
    "Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 DNA": "Type I-C",
    "Pragia fontium strain 24613": "Type I-F",
    "Xanthomonas citri pv. citri strain jx-6": "Type I-C",
    "Bacillus coagulans strain S-lac": "Type I-C",
    "Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA": "Type I-E",
    "Gardnerella vaginalis ATCC 14018 = JCM 11026 DNA": "Type I-E",
    "Parascardovia denticolens DSM 10105 = JCM 12538 DNA": "Type I-C",
    "Scardovia inopinata JCM 12537 DNA": "Type II-C",
    "Clostridium aceticum strain DSM 1496": "Type I-B",
    "Pseudomonas aeruginosa DSM 50071": "Type I-F",
    "Marinovum algicola DG 898": "Type II-C",
    "Bacillus smithii strain DSM 4216": "Type I-B",
    "Lactobacillus koreensis strain 26-25": "Type I-E",
    "Riemerella anatipestifer strain 153": "Type VI-B",
    "Nocardia farcinica genome assembly NCTC11134": "Type I-E",
    "Leptospirillum sp. Group II 'CF-1'": "Type I-E",
    "Anoxybacillus gonensis strain G2": "Type I-B",
    "Listeria monocytogenes strain LM850658": "Type I-B",
    "Staphylococcus schleiferi strain 1360-13": "Type II-C",
    "Staphylococcus schleiferi strain 5909-02": "Type II-C",
    "Staphylococcus schleiferi strain 2317-03": "Type II-C",
    "Olsenella sp. oral taxon 807 strain F0089": "Type I-C",
    "Luteipulveratus mongoliensis strain MN07-A0370 genome": "Type I-E",
    "Prevotella fusca JCM 17724 strain W1435 chromosome 2": "Type II-C",
    "Ottowia sp. oral taxon 894 strain W10237": "Type II-C",
    "Microcystis panniformis FACHB-1757": "Type I-D",
    "Chelatococcus sp. CO-6": "Type I-C",
    "Nitrospira moscoviensis strain NSP M-1": "Type I-A",
    "Leptotrichia sp. oral taxon 212 strain W10393": "Type I-B",
    "Cronobacter muytjensii ATCC 51329": "Type I-F",
    "Corynebacterium deserti GIMN1.010": "Type I-E",
    "Streptomyces sp. CFMR 7 strain CFMR-7": "Type I-E",
    "Streptomyces sp. CFMR 7 strain CFMR-7 plasmid": "Type I-E",
    "Capnocytophaga sp. oral taxon 323 strain F0383": "Type II-C",
    "Bifidobacterium longum subsp. infantis strain BT1": "Type I-C",
    "Bifidobacterium longum strain BG7": "Type II-C",
    "Fusobacterium nucleatum subsp. animalis strain KCOM 1279": "Type I-B",
    "Megasphaera elsdenii 14-14": "Type I-C",
    "Clostridium perfringens strain FORC_003": "Type II-C",
    "Confluentimicrobium sp. EMB200-NS6": "Type I-E",
    "Halanaeroarchaeum sulfurireducens strain M27-SA2": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Thompson strain RM1984": "Type I-E",
    "Lactobacillus helveticus strain CAUH18": "Type I-C",
    "Microbacterium sp. No. 7": "Type I-E",
    "Lactobacillus gallinarum strain HFD4": "Type I-C",
    "Azospirillum brasilense strain Sp7": "Type I-C",
    "Acinetobacter baumannii strain D36": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Weltevreden genome assembly 10259": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Weltevreden genome assembly 98_11262": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Weltevreden genome assembly C2346": "Type I-E",
    "Burkholderia plantarii strain ATCC 43733 chromosome 1": "Type I-F",
    "Streptococcus anginosus strain J4211": "Type II-C",
    "Fusobacterium nucleatum subsp. polymorphum strain ChDC F306": "Type III-A",
    "Aneurinibacillus sp. XH2": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374": "Type I-E",
    "Staphylococcus agnetis strain 908": "Type II-C",
    "Salmonella enterica subsp. enterica serovar Anatum strain GT-01": "Type I-E",
    "Marinobacter sp. LQ44": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_020": "Type I-E",
    "Fusobacterium hwasookii ChDC F300": "Type III-A",
    "Clostridium butyricum strain KNU-L09 chromosome 2": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Senftenberg genome assembly NCTC10384": "Type I-E",
    "Methanobacterium formicicum genome assembly isolate Mb9": "Type I-B",
    "Helicobacter typhlonius genome assembly htyphlonius_mit97-6810": "Type II-C",
    "Actinobacillus pleuropneumoniae serovar 8 genome assembly MIDG2331": "Type I-F",
    "Clostridium butyricum strain JKY6D1 chromosome 2": "Type I-B",
    "Paenibacillus naphthalenovorans strain 32O-Y": "Type I-C",
    "Rathayibacter toxicus strain WAC3373": "Type I-E",
    "Vibrio alginolyticus strain ATCC 33787 plasmid pMBL287": "Type I-F",
    "Streptococcus gallolyticus strain ICDDRB-NRC-S1": "Type II-C",
    "Methanobrevibacter millerae strain SM9": "Type III-A",
    "Eubacterium limosum strain SA11": "Type I-B",
    "Pseudoalteromonas rubra strain SCSIO 6842 chromosome 2": "Type I-C",
    "Clostridium autoethanogenum DSM 10061": "Type I-B",
    "Halobacterium sp. JI20-1 genome assembly Halobacterium hubeiense JI20-1": "Type I-B",
    "Pseudomonas aeruginosa strain W36662": "Type I-F",
    "Pseudomonas aeruginosa strain H27930": "Type I-F",
    "Pseudomonas aeruginosa strain M37351": "Type I-F",
    "Aerococcus urinaeequi strain USDA-ARS-USMARC-56713": "Type I-E",
    "Leclercia adecarboxylata strain USDA-ARS-USMARC-60222": "Type I-F",
    "Xanthomonas oryzae pv. oryzae strain PXO83": "Type I-C",
    "Corynebacterium glutamicum strain USDA-ARS-USMARC-56828": "Type I-U",
    "Klebsiella pneumoniae subsp. pneumoniae strain RJF999": "Type I-E",
    "Kurthia sp. 11kri321": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001387": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium isolate SO4698-09 genome assembly": "Type I-E",
    "Aerococcus sanguinicola strain CCUG43001": "Type I-E",
    "Aerococcus urinae strain CCUG36881": "Type I-E",
    "Aerococcus urinaehominis strain CCUG42038B": "Type I-E",
    "Turicibacter sp. H121": "Type II-C",
    "Mycobacterium tuberculosis strain F28": "Type III-A",
    "Mycobacterium tuberculosis strain 22115": "Type III-A",
    "Thermosulfidibacter takaii ABI70S6 DNA": "Type I-B",
    "Pseudomonas aeruginosa DNA": "Type I-F",
    "Sulfurospirillum cavolei DNA": "Type I-B",
    "Rothia mucilaginosa DNA": "Type I-U",
    "Listeria monocytogenes strain 2015TE19005-1355": "Type II-A",
    "Actinomyces oris strain T14V": "Type I-U",
    "Moraxella osloensis strain CCUG 350": "Type I-F",
    "Burkholderia sp. PAMC 26561 chromosome 1": "Type I-C",
    "Methanogenic archaeon ISO4-H5": "Type I-E",
    "Desulfovibrio sp. J2": "Type I-C",
    "Burkholderia sp. PAMC 28687 strain PAMC28687 chromosome 1": "Type I-E",
    "Martelella sp. AD-3": "Type I-C",
    "Pasteurella multocida subsp. multocida PMTB2.1": "Type I-F",
    "Steroidobacter denitrificans strain DSM 18526": "Type I-C",
    "Corynebacterium simulans strain PES1": "Type I-E",
    "Corynebacterium simulans strain Wattiau": "Type I-E",
    "Zhongshania aliphaticivorans strain SM2": "Type I-F",
    "Ralstonia solanacearum strain IBSBF1503": "Type I-E",
    "Pedobacter cryoconitis strain PAMC 27485": "Type II-C",
    "Legionella pneumophila subsp. pneumophila strain Toronto-20052": "Type I-C",
    "Pseudomonas aeruginosa strain F63912": "Type I-E",
    "Propionibacterium acidipropionici strain ATCC 55737": "Type I-U",
    "Pseudomonas aeruginosa strain N17-1": "Type I-C",
    "Dehalococcoides mccartyi strain 11a5": "Type I-E",
    "Klebsiella pneumoniae subsp. pneumoniae strain TGH8": "Type I-E",
    "Klebsiella pneumoniae subsp. pneumoniae strain TGH10": "Type I-E",
    "Pediococcus damnosus strain TMW 2.1536": "Type II-A",
    "Desulfuromonas sp. DDH964": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Weltevreden str. 1655": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1736": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1676": "Type I-E",
    "Defluviimonas alba strain cai42 plasmid cai42_plasmidC": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1728": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1766": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2010K-1587": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1781": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1880": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1896": "Type I-E",
    "Geobacter anodireducens strain SD-1": "Type I-E",
    "Salmonella enterica subsp. diarizonae strain 11-01853": "Type I-E",
    "Rhodovulum sulfidophilum DSM 1374": "Type I-E",
    "Anoxybacillus sp. B2M1": "Type I-B",
    "Anoxybacillus sp. B7M1": "Type I-B",
    "Acinetobacter baumannii strain 3207": "Type I-F",
    "Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260": "Type I-B",
    "Escherichia coli strain 2011C-3911": "Type I-E",
    "Klebsiella pneumoniae strain SKGH01": "Type I-E",
    "Clostridium butyricum strain TOA chromosome 2": "Type I-B",
    "Klebsiella pneumoniae strain AATZP": "Type I-E",
    "Streptomyces sp. RTd22": "Type I-B",
    "Marinobacterium sp. ST58-10": "Type III-B",
    "Streptomyces sp. SAT1": "Type I-E",
    "Pasteurella multocida subsp. multocida HB01": "Type I-F",
    "Klebsiella pneumoniae strain Kpn223": "Type I-E",
    "Lactobacillus backii strain TMW 1.1988": "Type II-C",
    "Lactobacillus backii strain TMW 1.1991": "Type II-C",
    "Lactobacillus backii strain TMW 1.1992": "Type II-C",
    "Escherichia coli strain 09-00049": "Type I-E",
    "Escherichia coli strain GB089": "Type I-E",
    "Streptococcus thermophilus strain CS8": "Type II-C",
    "Prosthecochloris sp. CIB 2401": "Type I-E",
    "Planococcus antarcticus DSM 14505": "Type II-C",
    "Bifidobacterium animalis subsp. animalis strain YL2": "Type I-E",
    "Lachnoclostridium sp. YL32": "Type I-C",
    "Akkermansia muciniphila strain YL44": "Type I-C",
    "Burkholderiales bacterium YL45": "Type II-B",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain SH12-007": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain SH12-003": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain 11-004736-1-7": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain CE-R2-11-0435": "Type I-E",
    "Aggregatibacter actinomycetemcomitans strain IDH781": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain A3EZ223": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain AMR588-04-00437": "Type I-E",
    "Synechococcus sp. PCC 7003 plasmid unnamed2": "Type III-B",
    "Synechococcus sp. PCC 7117 plasmid unnamed5": "Type I-D",
    "Neisseria meningitidis strain DE10444": "Type II-C",
    "Neisseria meningitidis strain M22819": "Type II-C",
    "Neisseria meningitidis strain M22809": "Type II-C",
    "Neisseria meningitidis strain M22811": "Type II-C",
    "Neisseria meningitidis strain M22804": "Type II-C",
    "Neisseria meningitidis strain M22828": "Type II-C",
    "Neisseria meningitidis strain M22822": "Type II-C",
    "Neisseria meningitidis strain M24705": "Type II-C",
    "Bordetella pseudohinzii strain HI4681": "Type II-C",
    "Lactobacillus helveticus strain D76": "Type I-B",
    "Lactobacillus lindneri strain TMW 1.1993": "Type II-A",
    "Salmonella enterica subsp. enterica serovar Typhimurium strain NC983": "Type I-E",
    "Xanthomonas fragariae isolate Fap29": "Type I-F",
    "Xanthomonas fragariae isolate Fap21": "Type I-F",
    "Klebsiella pneumoniae strain ED23": "Type I-E",
    "Cutibacterium avidum strain DPC 6544": "Type I-E",
    "Acidovorax sp. RAC01": "Type I-C",
    "Lactobacillus johnsonii strain BS15": "Type II-A",
    "Anaerolineaceae bacterium oral taxon 439 strain W11661": "Type I-C",
    "Selenomonas sp. oral taxon 920 strain W5150": "Type I-C",
    "Campylobacter coli strain 14983A": "Type II-C",
    "Campylobacter jejuni subsp. jejuni strain 14980A": "Type II-C",
    "Bifidobacterium longum strain 35624": "Type I-C",
    "Pseudomonas aeruginosa strain PA_D1": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D2": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D9": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D21": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D22": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D25": "Type I-F",
    "Pasteurella multocida strain Pm-3": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D5": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931": "Type I-F",
    "Enterobacter hormaechei subsp. oharae strain DSM 16687": "Type I-F",
    "Lactobacillus fermentum strain NCC2970": "Type II-A",
    "Klebsiella pneumoniae subsp. pneumoniae strain TGH13": "Type I-E",
    "Xanthomonas oryzae pv. oryzae strain PXO71": "Type I-C",
    "Xanthomonas oryzae pv. oryzae strain PXO145": "Type I-C",
    "Xanthomonas oryzae pv. oryzae strain PXO211": "Type I-C",
    "Xanthomonas oryzae pv. oryzae strain PXO236": "Type I-C",
    "Xanthomonas oryzae pv. oryzae strain PXO563": "Type I-C",
    "Xanthomonas oryzae pv. oryzae strain PXO602": "Type I-C",
    "Pseudoalteromonas luteoviolacea strain S4054249 chromosome 2": "Type I-F",
    "Pseudoalteromonas luteoviolacea strain S4054 chromosome 2": "Type I-F",
    "Pseudoalteromonas luteoviolacea strain S40542 chromosome 2": "Type I-F",
    "Geosporobacter ferrireducens strain IRF9": "Type I-B",
    "Streptomyces rubrolavendulae strain MJM4426": "Type I-E",
    "Neisseria meningitidis strain 331401": "Type II-C",
    "Escherichia coli strain FORC_031": "Type I-E",
    "Legionella pneumophila strain Philadelphia_1_ATCC": "Type II-B",
    "Legionella pneumophila strain Philadelphia_4": "Type II-B",
    "Legionella pneumophila strain Philadelphia_2": "Type II-B",
    "Legionella pneumophila subsp. pneumophila strain FFI102": "Type I-F",
    "Legionella pneumophila subsp. pneumophila strain FFI103": "Type I-F",
    "Legionella pneumophila subsp. pneumophila strain FFI104": "Type I-F",
    "Legionella pneumophila subsp. pneumophila strain FFI105": "Type I-F",
    "Pediococcus acidilactici strain ZPA017": "Type II-A",
    "Pseudomonas aeruginosa strain PA1088": "Type I-C",
    "Pseudomonas aeruginosa strain PA8281": "Type I-C",
    "Flavobacterium sp. LPB0076": "Type II-C",
    "Psychrobacter sp. AntiMn-1": "Type I-C",
    "Clostridium formicaceticum strain ATCC 27076": "Type I-B",
    "Chromobacterium vaccinii strain 21-1": "Type I-E",
    "Klebsiella pneumoniae strain KP5": "Type I-E",
    "Propionibacterium acidipropionici strain F3E8": "Type I-U",
    "Clostridium pasteurianum DSM 525 = ATCC 6013": "Type I-B",
    "Clostridium pasteurianum strain M150B": "Type I-B",
    "Bacillus coagulans strain BC-HY1": "Type I-B",
    "Klebsiella pneumoniae strain CAV1016": "Type I-E",
    "Pseudomonas aeruginosa strain PA7790": "Type I-C",
    "Paenibacillus polymyxa strain YC0573": "Type I-C",
    "Vibrio parahaemolyticus strain FORC_022 chromosome 2": "Type I-F",
    "Lactobacillus plantarum strain MF1298": "Type II-A",
    "Klebsiella pneumoniae strain Kp_Goe_822579": "Type I-E",
    "Alteromonas mediterranea strain CP48": "Type I-F",
    "Alteromonas mediterranea strain CP49": "Type I-F",
    "Delftia sp. HK171": "Type I-F",
    "Clostridium butyricum strain CDC_51208 plasmid pNPD4_2": "Type I-B",
    "Chelatococcus daeguensis strain TAD1": "Type I-C",
    "Pelobacter acetylenicus strain DSM 3246": "Type I-E",
    "Lactobacillus delbrueckii subsp. delbrueckii strain KCTC 13731": "Type II-A",
    "Lactobacillus delbrueckii subsp. lactis strain KCTC 3035": "Type I-C",
    "Clostridium botulinum strain CDC_1632": "Type I-B",
    "Granulibacter bethesdensis strain NIH1.4": "Type I-E",
    "Granulibacter bethesdensis strain NIH5.1": "Type I-E",
    "Granulibacter bethesdensis strain NIH6.1": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport strain CFSAN003890": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport strain CFSAN003387": "Type I-E",
    "Marinilactibacillus sp. 15R": "Type I-C",
    "Mycobacterium tuberculosis strain I0004241-1": "Type III-A",
    "Mycobacterium tuberculosis strain M0018684-2": "Type III-A",
    "Mycobacterium tuberculosis strain I0004000-1": "Type III-A",
    "Acinetobacter baumannii strain AF-401": "Type I-F",
    "Escherichia coli strain C1": "Type I-E",
    "Escherichia coli strain D7": "Type I-E",
    "Escherichia coli strain H5": "Type I-E",
    "Escherichia coli strain C2": "Type I-E",
    "Escherichia coli strain D1": "Type I-E",
    "Escherichia coli strain D8": "Type I-E",
    "Escherichia coli strain D10": "Type I-E",
    "Escherichia coli strain H3": "Type I-E",
    "Escherichia coli strain S40": "Type I-E",
    "Escherichia coli strain M1": "Type I-E",
    "Escherichia coli strain M3": "Type I-E",
    "Escherichia coli strain M8": "Type I-E",
    "Paenibacillus xylanexedens strain PAMC 22703": "Type I-C",
    "Lactobacillus delbrueckii subsp. indicus strain JCM 15610": "Type I-E",
    "Klebsiella pneumoniae strain Kp_Goe_149473": "Type I-E",
    "Klebsiella pneumoniae strain Kp_Goe_827024": "Type I-E",
    "Klebsiella pneumoniae strain Kp_Goe_827026": "Type I-E",
    "Klebsiella pneumoniae strain Kp_Goe_152021": "Type I-E",
    "Klebsiella pneumoniae strain KP_Goe_828304": "Type I-E",
    "Klebsiella pneumoniae strain Kp_Goe_149832": "Type I-E",
    "Maribacter sp. T28": "Type II-C",
    "Xanthomonas citri pv. citri strain LL074-4": "Type I-C",
    "Xanthomonas citri pv. citri strain LH276": "Type I-C",
    "Xanthomonas citri pv. citri strain LJ207-7": "Type I-C",
    "Pediococcus acidilactici strain BCC1": "Type II-A",
    "Mycobacterium tuberculosis strain DK9897": "Type III-A",
    "Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Infantis strain N55391": "Type I-E",
    "Streptomyces sp. Tue6075": "Type I-E",
    "Klebsiella pneumoniae strain ATCC 35657": "Type I-E",
    "Lactobacillus jensenii strain SNUV360": "Type II-A",
    "Lactobacillus amylophilus DSM 20533 = JCM 1125": "Type I-E",
    "Campylobacter coli strain YH502": "Type II-C",
    "Escherichia coli strain 2016C-3936C1": "Type I-E",
    "Mycobacterium tuberculosis H37Ra": "Type III-A",
    "Xanthomonas citri pv. citri strain LM199 chromosome": "Type I-C",
    "Xanthomonas citri pv. citri strain LM180 chromosome": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Cerro strain 87": "Type I-E",
    "Corynebacterium flavescens strain OJ8": "Type I-U",
    "Corynebacterium frankenforstense DSM 45800 strain ST18": "Type I-E",
    "Corynebacterium phocae strain M408/89/1": "Type I-E",
    "Lactobacillus fermentum strain SNUV175": "Type I-E",
    "Acinetobacter junii strain 65": "Type I-F",
    "Pseudomonas alcaliphila JAB1": "Type I-F",
    "Klebsiella pneumoniae strain CN1": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN004175": "Type I-E",
    "Lactobacillus delbrueckii subsp. bulgaricus strain DSM 20080": "Type II-A",
    "Prevotella intermedia strain strain 17 chromosome I": "Type IV-B",
    "Prevotella intermedia strain strain 17 chromosome II": "Type II-C",
    "Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome I": "Type II-C*",
    "Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome II": "Type IV-B",
    "Klebsiella pneumoniae strain 825795-1": "Type I-E",
    "Paludisphaera borealis strain PX4": "Type I-C",
    "Mycobacterium tuberculosis strain 6548 chromosome": "Type III-A",
    "Salmonella enterica subsp. enterica serovar Senftenberg strain 775W": "Type I-E",
    "Halomonas sp. 1513": "Type I-E",
    "Winogradskyella sp. J14-2": "Type II-C",
    "Seonamhaeicola sp. S2-3": "Type II-C",
    "Kosakonia cowanii strain 888-76": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Apapa str. SA20060561": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Bergen str. ST350": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Wandsworth str. SA20092095": "Type I-E",
    "Jeotgalibaca sp. PTS2502": "Type II-C",
    "Pelagibaca abyssi strain JLT2014": "Type I-E",
    "Acidihalobacter ferrooxidans strain V8 genome": "Type I-U",
    "Streptococcus oralis strain S.MIT/ORALIS-351": "Type III-A",
    "Streptomyces autolyticus strain CGMCC0516": "Type I-E",
    "Lactobacillus rhamnosus strain BFE5264": "Type II-A",
    "Spirosoma montaniterrae strain DY10": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Typhimurium strain 81741": "Type I-E",
    "Tessaracoccus sp. NSG39": "Type I-E",
    "Mycobacterium tuberculosis TRS9 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB35 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB36 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB37 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB38 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB40 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB41 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB44 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB45 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS1 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS10 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS11 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS12 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS13 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS14 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS15 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS16 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS17 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS18 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS19 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS20 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS21 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS22 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS23 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS24 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS25 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS26 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS27 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS28 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS29 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS2 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS3 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS4 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS5 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS6 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS7 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS8 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS9 genome": "Type III-A",
    "Tessaracoccus flavescens strain SST-39T": "Type I-E",
    "Listeria monocytogenes strain 10-092876-0168": "Type II-A",
    "Listeria monocytogenes strain 10-092876-1763 LM10": "Type I-B",
    "Clostridium saccharobutylicum strain NCP 200": "Type I-B",
    "Clostridium saccharoperbutylacetonicum strain N1-504": "Type I-B",
    "Clostridium saccharobutylicum strain BAS/B3/SW/136": "Type I-B",
    "Clostridium saccharobutylicum strain NCP 258": "Type I-B",
    "Clostridium saccharobutylicum strain NCP 195": "Type I-B",
    "Veillonella parvula strain UTDB1-3": "Type III-D",
    "Streptomyces pactum strain ACT12": "Type I-E",
    "Bartonella apis strain BBC0178": "Type II-C",
    "Bartonella apis strain BBC0244": "Type II-C",
    "Cellvibrio sp. PSBB023": "Type I-E",
    "Clostridioides difficile strain BR81": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Typhimurium strain RM10607": "Type I-E",
    "Halomonas sp. 'Soap Lake #7'": "Type I-C",
    "Escherichia coli strain Ecol_224": "Type I-E",
    "Escherichia coli strain Ecol_545": "Type I-E",
    "Escherichia coli strain Ecol_881": "Type I-E",
    "Clostridium perfringens strain CP15 genome": "Type I-B",
    "Dehalococcoides mccartyi strain KBDCA3": "Type I-C",
    "Elizabethkingia meningoseptica strain G4076": "Type II-C",
    "Dehalococcoides mccartyi strain KBVC1": "Type I-E",
    "Streptococcus agalactiae strain Sag158,": "Type II-A",
    "Listeria monocytogenes strain ICDC-LM188": "Type II-A",
    "Escherichia coli strain AR_0118": "Type I-E",
    "Pseudomonas sp. S-6-2": "Type I-E",
    "Comamonas kerstersii strain 8943": "Type I-E",
    "Spirosoma aerolatum strain KACC 17939": "Type I-B",
    "Streptococcus suis ST3 chromosome": "Type II-C",
    "Sulfolobus acidocaldarius N8": "Type I-D",
    "Hyphomicrobium nitrativorans NL23": "Type I-C",
    "Listeria monocytogenes M7 chromosome": "Type I-B",
    "Ralstonia solanacearum Po82 chromosome": "Type I-E",
    "Microlunatus phosphovorus NM-1": "Type III-D",
    "Halorhabdus tiamatea SARL4B complete genome.": "Type I-B",
    "Bifidobacterium longum subsp. longum KACC 91563 chromosome": "Type II-C",
    "Candidatus Arthromitus sp. SFB-rat-Yit": "Type I-C",
    "Clostridium sp. SY8519": "Type I-E",
    "Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome": "Type I-U",
    "Pseudoxanthomonas spadix BD-a59": "Type I-C",
    "Streptococcus salivarius 57.I chromosome": "Type I-E",
    "Mycobacterium canettii CIPT 140010059": "Type III-A",
    "Streptococcus salivarius CCHSS3": "Type I-E",
    "Streptococcus equi subsp. zooepidemicus ATCC 35246 chromosome": "Type I-C",
    "Methanococcus maripaludis XI chromosome": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Thompson str. RM6836": "Type I-E",
    "Pasteurella multocida 36950 chromosome": "Type I-F",
    "Bifidobacterium animalis subsp. lactis BLC1": "Type I-U",
    "Melissococcus plutonius DAT561 chromosome 1": "Type I-C",
    "Mycobacterium tuberculosis RGTB327 chromosome": "Type III-A",
    "Mycobacterium tuberculosis RGTB423 chromosome": "Type III-A",
    "Burkholderia sp. YI23 chromosome 2": "Type I-E",
    "Tistrella mobilis KA081020-065 plasmid pTM1": "Type III-D",
    "Methanosaeta harundinacea 6Ac chromosome": "Type III-B",
    "Gordonia polyisoprenivorans VH2 chromosome": "Type I-U",
    "Streptococcus macedonicus ACA-DC 198": "Type II-C",
    "Salmonella enterica subsp. enterica serovar Heidelberg str. 41578": "Type I-E",
    "Pasteurella multocida subsp. multocida str. HN06 chromosome": "Type I-F",
    "Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1": "Type I-E",
    "Escherichia coli O104:H4 str. 2009EL-2071 chromosome": "Type I-E",
    "Cronobacter sakazakii ES15 chromosome": "Type I-E",
    "Mycobacterium tuberculosis 7199-99 complete genome.": "Type III-A",
    "Phycisphaera mikurensis NBRC 102666": "Type I-C",
    "Bifidobacterium asteroides PRL2011 chromosome": "Type I-E",
    "Streptococcus sp. I-G2": "Type II-C",
    "Salmonella enterica subsp. enterica serovar Heidelberg str. B182 chromosome": "Type I-E",
    "Bifidobacterium animalis subsp. lactis ATCC 27673 chromosome": "Type I-E",
    "Bifidobacterium animalis subsp. lactis B420 chromosome": "Type I-U",
    "Calothrix sp. PCC 6303 chromosome": "Type I-D",
    "Propionibacterium acidipropionici ATCC 4875 chromosome": "Type I-E",
    "Helicobacter cinaedi PAGU611": "Type II-C",
    "Geitlerinema sp. PCC 7407 chromosome": "Type I-U",
    "Synechococcus sp. PCC 7502 chromosome": "Type III-B",
    "Bdellovibrio exovorus JSS": "Type II-C",
    "Melioribacter roseus P3M chromosome": "Type I-B",
    "Klebsiella pneumoniae subsp. pneumoniae 1084 chromosome": "Type I-E",
    "Salmonella bongori N268-08": "Type I-E",
    "Corynebacterium terpenotabidum Y-11": "Type I-E",
    "Methanoculleus bourgensis MS2T complete genome": "Type I-U",
    "Mycobacterium canettii CIPT 140060008 complete genome.": "Type III-A",
    "Mycobacterium canettii CIPT 140070017 complete genome.": "Type I-U",
    "Nocardiopsis alba ATCC BAA-2165 chromosome": "Type I-E",
    "Enterococcus faecalis D32 chromosome": "Type II-A",
    "Helicobacter cinaedi ATCC BAA-847 DNA": "Type II-C",
    "Lactobacillus casei W56": "Type II-A",
    "Amycolatopsis mediterranei RB": "Type I-E",
    "Neisseria meningitidis Z2491": "Type II-C",
    "Riemerella anatipestifer RA-CH-1 chromosome": "Type II-C",
    "Staphylococcus aureus 08BA02176 chromosome": "Type III-A",
    "Leuconostoc gelidum JB7 chromosome": "Type II-A",
    "Clostridium tetani 12124569 main chromosome": "Type I-B",
    "Persephonella marina EX-H1": "Type I-B",
    "Geobacillus sp. GHH01": "Type III-B",
    "Candidatus Methanomethylophilus alvus Mx1201": "Type V-A",
    "Candidatus Nitrososphaera gargensis Ga9.2 chromosome": "Type I-B",
    "Mannheimia haemolytica USDA-ARS-SAM-185": "Type I-C",
    "Sorangium cellulosum So0157-2": "Type I-U",
    "Bifidobacterium thermophilum RBL67": "Type I-C",
    "Mannheimia haemolytica D153": "Type I-C",
    "Corynebacterium urealyticum DSM 7111": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921": "Type I-E",
    "Bifidobacterium animalis subsp. lactis Bl12": "Type I-U",
    "Treponema pedis str. T A4": "Type II-C",
    "Methanomassiliicoccus sp. Mx1-Issoire": "Type I-B",
    "Mycobacterium tuberculosis str. Haarlem/NITR202": "Type III-A",
    "Mycobacterium tuberculosis str. Beijing/NITR203": "Type III-A",
    "Mycobacterium tuberculosis EAI5": "Type III-A",
    "Mycobacterium tuberculosis CAS/NITR204": "Type III-A",
    "Mycobacterium tuberculosis EAI5/NITR206": "Type III-A",
    "Mannheimia haemolytica D174": "Type I-C",
    "Mannheimia haemolytica M42548": "Type I-C",
    "Lactobacillus rhamnosus LOCK900": "Type II-A",
    "complete chromosome Acholeplasma palmae.": "Type II-C",
    "Salmonella enterica subsp. enterica serovar Bovismorbificans str. 3114 complete genome.": "Type I-E",
    "Listeria monocytogenes EGD": "Type II-A",
    "Escherichia coli LY180": "Type I-E",
    "Pseudomonas aeruginosa RP73": "Type I-E",
    "Clostridium autoethanogenum DSM 10061": "Type I-B",
    "Streptomyces rapamycinicus NRRL 5491 genome.": "Type I-E",
    "Clostridium saccharobutylicum DSM 13864": "Type I-B",
    "Mannheimia haemolytica USMARC_2286": "Type I-C",
    "Methanobacterium sp. MB1 complete sequence.": "Type I-B",
    "Desulfitobacterium hafniense Y51": "Type I-B",
    "Thermosynechococcus sp. NK55 genome.": "Type I-A",
    "Salmonella enterica subsp. enterica serovar Agona str. 24249": "Type I-E",
    "Pseudomonas aeruginosa SCV20265": "Type I-F",
    "Magnetococcus sp. MC-1": "Type I-C",
    "Sphaerochaeta pleomorpha str. Grapes chromosome": "Type I-C",
    "Listeria monocytogenes strain C1-387": "Type I-B",
    "Listeria monocytogenes strain J2-031": "Type II-A",
    "Desulfobacterium autotrophicum HRM2": "Type I-B",
    "Desulfotalea psychrophila LSv54": "Type I-U",
    "Alkalilimnicola ehrlichei MLHE-1": "Type I-E",
    "Bifidobacterium longum DJO10A": "Type II-C",
    "Streptococcus agalactiae 2603V/R": "Type II-A",
    "Pseudomonas aeruginosa UCBPP-PA14": "Type I-F",
    "Clostridium tetani E88": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344": "Type I-E",
    "Salmonella bongori NCTC 12419": "Type I-E",
    "Methanobrevibacter sp. AbM4": "Type I-B",
    "Streptomyces avermitilis MA-4680 = NBRC 14893 DNA": "Type I-E",
    "Acidovorax sp. JS42": "Type I-F",
    "Acidobacterium capsulatum ATCC 51196": "Type I-C",
    "Prevotella intermedia 17 chromosome chromosome II": "Type II-C",
    "Prevotella intermedia 17 chromosome chromosome I": "Type VI-B",
    "Thermococcus sp. AM4 chromosome": "Type I-B",
    "Nocardia farcinica IFM 10152": "Type I-E",
    "Verrucosispora maris AB-18-032 chromosome": "Type I-E",
    "Methylobacillus flagellatus KT": "Type I-C",
    "Geobacter metallireducens GS-15": "Type I-C",
    "Anabaena cylindrica PCC 7122 plasmid pANACY.03": "Type III-B",
    "Aeropyrum pernix K1": "Type I-A",
    "Bacteroides fragilis NCTC 9343": "Type II-C",
    "Haloarcula marismortui ATCC 43049 plasmid pNG400": "Type I-B",
    "Pyrococcus abyssi GE5": "Type I-A",
    "Rhodobacter capsulatus SB1003 chromosome": "Type I-C",
    "Thermoplasma volcanium GSS1": "Type III-A",
    "Yersinia pseudotuberculosis IP 32953": "Type I-F",
    "Nostoc sp. PCC 7524 plasmid pNOS7524.01": "Type III-B",
    "Nostoc sp. PCC 7524 chromosome": "Type I-D",
    "Clostridium perfringens SM101": "Type I-B",
    "Chromohalobacter salexigens DSM 3043": "Type I-E",
    "Photorhabdus asymbiotica": "Type I-F",
    "Xanthomonas oryzae pv. oryzae KACC10331": "Type I-C",
    "Legionella pneumophila str. Lens plasmid pLPL": "Type I-F",
    "Legionella pneumophila str. Lens": "Type I-F",
    "Legionella pneumophila str. Paris": "Type II-B",
    "Photobacterium profundum SS9 plasmid pPBPR1": "Type I-E",
    "Photobacterium profundum SS9 chromosome 2": "Type I-F",
    "Frankia sp. EAN1pec": "Type I-B",
    "Corynebacterium jeikeium K411": "Type I-E",
    "Haloferax volcanii DS2 plasmid pHV4": "Type I-B",
    "Thermotoga neapolitana DSM 4359": "Type I-B",
    "Parvularcula bermudensis HTCC2503 chromosome": "Type I-C",
    "Rhodopseudomonas palustris BisB18": "Type II-C",
    "Rhodopseudomonas palustris BisB5": "Type II-C",
    "Geobacter sp. FRC-32": "Type I-C",
    "Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01": "Type I-B",
    "Escherichia coli str. K-12 substr. W3110": "Type I-E",
    "Shewanella putrefaciens CN-32": "Type I-F",
    "Pelodictyon luteolum DSM 273": "Type I-C",
    "Deinococcus geothermalis DSM 11300 plasmid 1": "Type I-E",
    "Synechococcus sp. PCC 7002 plasmid pAQ6": "Type III-B",
    "Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365": "Type I-E",
    "Nitrobacter winogradskyi Nb-255": "Type I-C",
    "Frankia alni ACN14a": "Type I-E",
    "Bifidobacterium breve UCC2003": "Type I-C",
    "Escherichia coli E24377A": "Type I-E",
    "Escherichia coli HS": "Type I-E",
    "Finegoldia magna ATCC 29328": "Type II-A",
    "Mycobacterium tuberculosis F11": "Type III-A",
    "Pelobacter carbinolicus DSM 2380": "Type I-E",
    "Pelobacter propionicus DSM 2379": "Type I-E",
    "Rhodoferax ferrireducens T118 plasmid1": "Type IV",
    "Rhodoferax ferrireducens T118": "Type I-C",
    "Methanosphaera stadtmanae DSM 3091": "Type I-B",
    "Chlorobium chlorochromatii CaD3": "Type I-C",
    "Corynebacterium glutamicum R": "Type I-E",
    "Xanthomonas oryzae pv. oryzae MAFF 311018": "Type I-C",
    "Vibrio cholerae O395 chromosome 1": "Type I-E",
    "Bacillus coagulans 36D1 chromosome": "Type I-B",
    "Streptococcus salivarius JIM8777": "Type II-C",
    "Hahella chejuensis KCTC 2396": "Type I-C",
    "Yersinia pseudotuberculosis IP 31758": "Type I-F",
    "Acidothermus cellulolyticus 11B": "Type II-C",
    "Shewanella sp. W3-18-1": "Type I-F",
    "Lactobacillus delbrueckii subsp. bulgaricus 2038 chromosome": "Type II-A",
    "Psychromonas ingrahamii 37": "Type I-E",
    "Xanthomonas oryzae pv. oryzae PXO99A": "Type I-C",
    "Campylobacter hominis ATCC BAA-381": "Type I-B",
    "Lactobacillus salivarius UCC118": "Type II-A",
    "Ramlibacter tataouinensis TTB310 chromosome": "Type I-C",
    "Bifidobacterium adolescentis ATCC 15703": "Type I-C",
    "Pseudomonas stutzeri A1501": "Type I-C",
    "Clostridium novyi NT": "Type I-B",
    "Pyrobaculum islandicum DSM 4184": "Type III-A",
    "Streptococcus sanguinis SK36": "Type III-A",
    "Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842": "Type I-E",
    "Granulibacter bethesdensis CGDNIH1": "Type I-E",
    "Thermococcus barophilus MP chromosome": "Type I-A",
    "Desulfovibrio vulgaris subsp. vulgaris DP4 plasmid pDVUL01": "Type I-C",
    "Listeria monocytogenes Finland 1998 chromosome": "Type I-B",
    "Listeria monocytogenes 10403S chromosome": "Type II-A",
    "Mycobacterium tuberculosis str. Haarlem": "Type III-A",
    "Leptothrix cholodnii SP-6": "Type I-C",
    "Cyanothece sp. PCC 7425 plasmid pP742501": "Type III-B",
    "Thioalkalivibrio sp. K90mix chromosome": "Type I-F",
    "Delftia acidovorans SPH-1": "Type I-F",
    "Geobacter lovleyi SZ": "Type I-E",
    "Shewanella baltica OS195": "Type I-F",
    "Pseudomonas mendocina ymp": "Type I-E",
    "Enterobacter sp. 638": "Type I-F",
    "Flavobacterium psychrophilum JIP02/86 complete genome": "Type II-C",
    "Methanococcus maripaludis C5": "Type I-B",
    "Parvibaculum lavamentivorans DS-1": "Type II-C",
    "Shewanella baltica OS185": "Type I-F",
    "Petrotoga mobilis SJ95": "Type I-B",
    "Lactobacillus helveticus DPC 4571": "Type I-C",
    "Natrinema sp. J7-2 chromosome": "Type I-B",
    "Xenorhabdus nematophila ATCC 19061": "Type I-E",
    "Escherichia coli SE11": "Type I-E",
    "Methanocorpusculum labreanum Z": "Type I-C",
    "Cronobacter turicensis z3032 complete genome": "Type I-E",
    "Actinobacillus pleuropneumoniae L20": "Type I-F",
    "Mycobacterium tuberculosis H37Ra": "Type III-A",
    "Methanobrevibacter smithii ATCC 35061": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Newport str. SL254 chromosome": "Type I-E",
    "Clostridium kluyveri DSM 555": "Type I-B",
    "Actinobacillus pleuropneumoniae serovar 3 str. JL03": "Type I-F",
    "Desulfatibacillum alkenivorans AK-01": "Type I-E",
    "Escherichia coli SMS-3-5": "Type I-E",
    "Bifidobacterium animalis subsp. lactis AD011": "Type I-U",
    "Mycobacterium tuberculosis CCDC5079 chromosome": "Type III-A",
    "Mycobacterium tuberculosis CCDC5180": "Type III-A",
    "Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome": "Type I-E",
    "Stackebrandtia nassauensis DSM 44728 chromosome": "Type I-C",
    "Anaeromyxobacter sp. K": "Type I-E",
    "Microcystis aeruginosa NIES-843": "Type I-D",
    "Kitasatospora setae KM-6054": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg str. SL476": "Type I-E",
    "Anaeromyxobacter dehalogenans 2CP-1": "Type I-E",
    "Streptomyces griseus subsp. griseus NBRC 13350": "Type I-E",
    "Erwinia tasmaniensis Et1/99": "Type I-F",
    "Streptococcus gordonii str. Challis substr. CH1": "Type II-C",
    "Thermobispora bispora DSM 43833 chromosome": "Type I-E",
    "Fusobacterium nucleatum subsp. vincentii 3_1_36A2": "Type II-A",
    "Thermomonospora curvata DSM 43183": "Type I-E",
    "Mycobacterium tuberculosis KZN 4207 chromosome": "Type III-A",
    "Mycobacterium tuberculosis KZN 1435": "Type III-A",
    "Mycobacterium tuberculosis KZN 605 chromosome": "Type III-A",
    "Nakamurella multipartita DSM 44233": "Type I-E",
    "Catenulispora acidiphila DSM 44928": "Type I-E",
    "Sphaerobacter thermophilus DSM 20745 chromosome 2": "Type I-E",
    "Veillonella parvula DSM 2008": "Type III-A",
    "Eggerthella lenta DSM 2243": "Type I-C",
    "Acinetobacter baumannii AB0057": "Type I-F",
    "Escherichia coli ATCC 8739": "Type I-E",
    "Halomicrobium mukohataei DSM 12286": "Type I-B",
    "Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1": "Type II-A",
    "Candidatus Puniceispirillum marinum IMCC1322 chromosome": "Type II-C",
    "Anoxybacillus flavithermus WK1": "Type I-B",
    "Cellvibrio japonicus Ueda107": "Type I-C",
    "Yersinia pseudotuberculosis YPIII": "Type I-F",
    "Yersinia pseudotuberculosis PB1/+": "Type I-F",
    "Spirosoma linguale DSM 74": "Type I-B",
    "Corynebacterium urealyticum DSM 7109": "Type I-E",
    "Acinetobacter baumannii AYE": "Type I-F",
    "Caldisericum exile AZM16c01": "Type I-B",
    "Escherichia coli str. K-12 substr. MG1655": "Type I-E",
    "Lactobacillus buchneri NRRL B-30929 chromosome": "Type II-A",
    "Chlorobaculum parvum NCIB 8327": "Type III-A",
    "Streptobacillus moniliformis DSM 12112": "Type II-C",
    "Halorhabdus utahensis DSM 12940": "Type I-B",
    "Haloferax mediterranei ATCC 33500": "Type I-B",
    "Thermococcus onnurineus NA1": "Type III-D",
    "Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774": "Type I-E",
    "Gardnerella vaginalis ATCC 14019 chromosome": "Type I-E",
    "Acidimicrobium ferrooxidans DSM 10331": "Type I-E",
    "Brachyspira murdochii DSM 12563 chromosome": "Type I-B",
    "Pirellula staleyi DSM 6068": "Type III-D",
    "Escherichia coli DH1": "Type I-E",
    "Actinobacillus pleuropneumoniae serovar 7 str. AP76": "Type I-F",
    "Lactobacillus paracasei subsp. paracasei 8700:2": "Type II-A",
    "Treponema azotonutricium ZAS-9 chromosome": "Type III-B",
    "Hydrogenobaculum sp. HO": "Type I-B",
    "Hydrogenobaculum sp. SN": "Type I-B",
    "Corynebacterium aurimucosum ATCC 700975": "Type I-E",
    "Mobiluncus curtisii ATCC 43063 chromosome": "Type I-E",
    "Erwinia amylovora": "Type I-E",
    "Bifidobacterium animalis subsp. lactis BB-12 chromosome": "Type I-U",
    "Listeria monocytogenes HCC23": "Type I-B",
    "Halothiobacillus neapolitanus c2": "Type I-C",
    "Bifidobacterium animalis subsp. lactis DSM 10140": "Type I-U",
    "Acinetobacter baumannii AB307-0294": "Type I-F",
    "Rhodobacter sphaeroides KD131 chromosome 1": "Type I-C",
    "Listeria monocytogenes L99": "Type I-B",
    "Lactobacillus rhamnosus GG": "Type II-A",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. D23580": "Type I-E",
    "Acidaminococcus intestini RyC-MR95 chromosome": "Type II-A",
    "Allochromatium vinosum DSM 180 chromosome": "Type I-E",
    "Ilyobacter polytropus DSM 2926 plasmid pILYOP01": "Type II-C",
    "Aminobacterium colombiense DSM 12261 chromosome": "Type I-A",
    "Desulfovibrio vulgaris RCH1 plasmid pDEVAL01": "Type I-C",
    "Bifidobacterium animalis subsp. lactis V9 chromosome": "Type I-U",
    "Desulfobulbus propionicus DSM 2032 chromosome": "Type I-C",
    "Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome": "Type I-E",
    "Bifidobacterium animalis subsp. lactis Bl-04": "Type I-U",
    "Geobacillus sp. Y4.1MC1 chromosome": "Type I-B",
    "Clostridium kluyveri NBRC 12016": "Type I-B",
    "Ignisphaera aggregans DSM 17230 chromosome": "Type I-A",
    "Escherichia coli IAI1": "Type I-E",
    "Escherichia fergusonii ATCC 35469": "Type I-E",
    "Roseburia hominis A2-183 chromosome": "Type I-C",
    "Escherichia coli ED1a": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chromosome": "Type I-E",
    "Desulfurivibrio alkaliphilus AHT2 chromosome": "Type I-F",
    "Ferroglobus placidus DSM 10642 chromosome": "Type I-A",
    "Cellulomonas fimi ATCC 484 chromosome": "Type I-E",
    "Acidaminococcus fermentans DSM 20731": "Type I-C",
    "Escherichia coli LF82": "Type I-F",
    "Thermococcus gammatolerans EJ3": "Type I-A",
    "Tolumonas auensis DSM 9187": "Type I-F",
    "Alicycliphilus denitrificans BC chromosome": "Type II-C",
    "Alicycliphilus denitrificans K601 chromosome": "Type II-C",
    "Neisseria meningitidis 8013": "Type II-C",
    "Thermococcus sibiricus MM 739": "Type I-B",
    "Hydrogenobacter thermophilus TK-6": "Type I-B",
    "Zymomonas mobilis subsp. mobilis NCIB 11163": "Type I-F",
    "Zymomonas mobilis subsp. mobilis NCIB 11163 plasmid pZA1002": "Type I-C",
    "Sphingobium sp. SYK-6": "Type I-C",
    "Dehalococcoides sp. GT chromosome": "Type I-E",
    "Olsenella uli DSM 7084 chromosome": "Type II-A",
    "Thermosphaera aggregans DSM 11486 chromosome": "Type I-A",
    "Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011": "Type I-E",
    "Nostoc punctiforme PCC 73102": "Type I-D",
    "Deferribacter desulfuricans SSM1": "Type I-B",
    "Deferribacter desulfuricans SSM1 megaplasmid pDF308": "Type I-B",
    "Klebsiella variicola At-22 chromosome": "Type I-E",
    "Desulfovibrio desulfuricans ND132 chromosome": "Type I-C",
    "Arcanobacterium haemolyticum DSM 20595 chromosome": "Type I-E",
    "Thermaerobacter marianensis DSM 12885 chromosome": "Type I-B",
    "Clostridium difficile R20291": "Type I-B",
    "Desulfosporosinus acidiphilus SJ4 chromosome": "Type I-C",
    "Desulfobacula toluolica Tol2": "Type I-B",
    "Rhodopseudomonas palustris DX-1 chromosome": "Type I-C",
    "Mycobacterium tuberculosis str. Erdman = ATCC 35801 DNA": "Type III-A",
    "Halanaerobium sp. 'sapolanicus' chromosome": "Type I-B",
    "Gordonibacter pamelaeae 7-10-1-b draft genome.": "Type II-A",
    "Corynebacterium resistens DSM 45100 chromosome": "Type I-E",
    "Ethanoligenens harbinense YUAN-3 chromosome": "Type I-C",
    "Geobacter sulfurreducens KN400 chromosome": "Type I-E",
    "Spirochaeta thermophila DSM 6192 chromosome": "Type I-C",
    "Acidilobus saccharovorans 345-15 chromosome": "Type III-B",
    "Bacillus clausii KSM-K16": "Type I-C",
    "Methanosalsum zhilinae DSM 4017 chromosome": "Type I-E",
    "Sulfobacillus acidophilus DSM 10332 chromosome": "Type I-B",
    "Rothia mucilaginosa DY-18": "Type I-U",
    "Geobacillus sp. C56-T3 chromosome": "Type I-B",
    "Archaeoglobus veneficus SNP6 chromosome": "Type I-B",
    "Shewanella baltica OS678 chromosome": "Type I-F",
    "Paludibacter propionicigenes WB4 chromosome": "Type IV",
    "Thermoanaerobacter wiegelii Rt8.B1 chromosome": "Type I-B",
    "Ruminococcus albus 7 chromosome": "Type I-C",
    "Corynebacterium diphtheriae 31A chromosome": "Type II-C",
    "Corynebacterium diphtheriae PW8 chromosome": "Type I-E",
    "Corynebacterium diphtheriae HC03 chromosome": "Type I-E",
    "Niastella koreensis GR20-10 chromosome": "Type I-B",
    "Bifidobacterium animalis subsp. animalis ATCC 25527 chromosome": "Type I-E",
    "Mycobacterium tuberculosis CTRI-2 chromosome": "Type III-A",
    "Odoribacter splanchnicus DSM 20712 chromosome": "Type I-B",
    "Lactobacillus salivarius CECT 5713 chromosome": "Type II-A",
    "Amycolatopsis mediterranei S699 chromosome": "Type I-E",
    "Erwinia amylovora ATCC 49946": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. T000240": "Type I-E",
    "Delftia sp. Cs1-4 chromosome": "Type I-F",
    "Bifidobacterium animalis subsp. lactis Bi-07 chromosome": "Type I-U",
    "Thermus scotoductus SA-01 chromosome": "Type I-E",
    "Taylorella equigenitalis ATCC 35865 chromosome": "Type I-C",
    "Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome": "Type I-F",
    "Deinococcus gobiensis I-0 plasmid P5": "Type I-E",
    "Pseudogulbenkiania sp. NH8B": "Type I-E",
    "Halobacteroides halobius DSM 5150": "Type I-A",
    "Lactobacillus crispatus ST1": "Type I-E",
    "Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1": "Type I-U",
    "Methylophaga nitratireducenticrescens strain JAM1": "Type I-F",
    "Methylophaga sp. JAM7 chromosome": "Type I-F",
    "Cyanobacterium aponinum PCC 10605 chromosome": "Type III-A",
    "Clostridium sp. BNL1100 chromosome": "Type I-C",
    "Fluviicola taffensis DSM 16823 chromosome": "Type II-C",
    "Halophilic archaeon DL31 chromosome": "Type I-D",
    "Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02": "Type III-B",
    "Streptococcus parasanguinis ATCC 15912 chromosome": "Type I-C",
    "Aromatoleum aromaticum EbN1": "Type I-C",
    "Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201": "Type III-A",
    "Rothia dentocariosa ATCC 17931 chromosome": "Type I-U",
    "Desulfurococcus mucosus DSM 2162 chromosome": "Type I-A",
    "Thiocystis violascens DSM 198 chromosome": "Type I-E",
    "Prevotella denticola F0289 chromosome": "Type II-C",
    "Lactobacillus fermentum F-6": "Type I-E",
    "Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome": "Type I-E",
    "Lactobacillus helveticus H10 chromosome": "Type I-C",
    "Calditerrivibrio nitroreducens DSM 19672 chromosome": "Type III-A",
    "Desulfosporosinus orientis DSM 765 chromosome": "Type I-C",
    "Natronobacterium gregoryi SP2 chromosome": "Type I-B",
    "Thermus thermophilus JL-18 plasmid pTTJL1801": "Type I-E",
    "Mycobacterium tuberculosis CDC1551": "Type III-A",
    "Mycobacterium tuberculosis H37Rv": "Type III-A",
    "Thauera sp. MZ1T": "Type I-E",
    "Ralstonia solanacearum CFBP2957": "Type I-E",
    "Bacteroides fragilis 638R": "Type II-C",
    "Streptococcus anginosus C1051": "Type II-C",
    "Weeksella virosa DSM 16922 chromosome": "Type II-C",
    "Belliella baltica DSM 15883 chromosome": "Type II-C",
    "Bifidobacterium breve ACS-071-V-Sch8b chromosome": "Type I-C",
    "Methanomethylovorans hollandica DSM 15978": "Type III-C",
    "Treponema succinifaciens DSM 2489 chromosome": "Type III-A",
    "Spirochaeta thermophila DSM 6578 chromosome": "Type I-D",
    "Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1": "Type I-E",
    "Listeria monocytogenes SLCC2540": "Type II-A",
    "Porphyromonas asaccharolytica DSM 20707 chromosome": "Type I-C",
    "Lactobacillus helveticus R0052 chromosome": "Type I-C",
    "Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough megaplasmid": "Type I-C",
    "Listeria monocytogenes SLCC5850": "Type II-A",
    "Desulfovibrio vulgaris str. 'Miyazaki F'": "Type I-C",
    "Bifidobacterium bifidum S17 chromosome": "Type II-A",
    "Spirochaeta africana DSM 8902 chromosome": "Type I-F",
    "Propionibacterium freudenreichii subsp. shermanii isolate PFREUDJS1 genome assembly": "Type I-U",
    "Methanoculleus sp. MAB1 isolate Methanoculleus sp MAB1 genome assembly": "Type I-U",
    "Lactobacillus rhamnosus strain BPL5 genome assembly": "Type II-A",
    "Neisseria weaveri strain NCTC13585 genome assembly": "Type I-C",
    "Xanthomonas translucens pv. translucens DSM 18974 isolate peng1 genome assembly": "Type I-C",
    "Petrimonas mucosa isolate ING2-E5A genome assembly": "Type I-B",
    "Clostridium chauvoei JF4335 genome assembly": "Type I-B",
    "Treponema brennaborense DSM 12168 chromosome": "Type I-C",
    "Prevotella dentalis DSM 3688 chromosome 2": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 chromosome": "Type I-E",
    "Lactobacillus johnsonii DPC 6026 chromosome": "Type II-A",
    "Selenomonas ruminantium subsp. lactilytica TAM6421": "Type I-F",
    "Clostridium botulinum BKT015925 plasmid p1BKT015925": "Type I-B",
    "Alcanivorax dieselolei B5 chromosome": "Type I-F",
    "Clostridium saccharoperbutylacetonicum N1-4(HMT)": "Type I-B",
    "Acetobacterium woodii DSM 1030 chromosome": "Type I-B",
    "Neisseria meningitidis M01-240355 chromosome": "Type II-C",
    "Pseudomonas aeruginosa M18 chromosome": "Type I-F",
    "Bacillus coagulans 2-6 chromosome": "Type I-B",
    "Neisseria meningitidis WUE 2594": "Type II-C",
    "Arcobacter sp. L": "Type I-B",
    "Cronobacter sakazakii Sp291": "Type I-E",
    "Streptococcus gallolyticus subsp. gallolyticus ATCC 43143": "Type II-A",
    "Streptococcus pasteurianus ATCC 43144": "Type II-C",
    "Rubrivivax gelatinosus IL144": "Type I-E",
    "Staphylococcus pseudintermedius ED99 chromosome": "Type II-C",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chromosome": "Type I-E",
    "Xanthomonas campestris pv. raphani 756C chromosome": "Type I-F",
    "Polymorphum gilvum SL003B-26A1 chromosome": "Type I-E"
}

# Characters that we will allow in our sequences.
# Some K, Y, Ms and others kept popping up.
goodChars = set('ATGC\n')

others = 0
cata = 0
for l in iFile:
    # if l[0] is the '>' character, then it's just a label, so we'll hold onto that.
    if l[0] == '>':
        label = l.split(' ', 1)[1].split(',', 1)[0]
        try:
            # Test if label has a type
            label = types[label]
            cata += 1
        except:
            # If not, give label 'Other'
            others += 1
            label = 'Other'
    else:
        # If l[0] is a new line character only, then we know that there is a space, and the CRISPR sequence is done
        # and we are about to roll over into the next CRISPR (next line will be a label anyways)
        if l[0] == '\n':
            # Checks if the sequence only contains ATGCs.
            # If the letters check out, save the label and the CRISPR to their respective files.
            if set(CRISPR) <= goodChars:

                # If the CRISPR is actually longer than MIN_SIZE, we'll take it.
                # We want to make sure there is enough info in there to eliminate noise.
                if len(CRISPR) >= MIN_SIZE:
                    labelFile.write(label + '\n')
                    oFile.write(CRISPR + '\n')

            CRISPR = ''

        # OK, here we just have part (or possibly all?) of a CRISPR sequence
        else:
            CRISPR = CRISPR + l.strip()


iFile.close()
oFile.close()
labelFile.close()

# Prints amounts to console
cata = cata - others
print(f'{cata} put in catagories.')
print(f'{others} Put in other catagory.')

9e8ddd6ddb32f3fb9e801d1a12ebe393e935dae1
<mask token>

<mask token>
for l in iFile:
    if l[0] == '>':
        label = l.split(' ', 1)[1].split(',', 1)[0]
        try:
            label = types[label]
            cata += 1
        except:
            others += 1
            label = 'Other'
    elif l[0] == '\n':
        if set(CRISPR) <= goodChars:
            if len(CRISPR) >= MIN_SIZE:
                labelFile.write(label + '\n')
                oFile.write(CRISPR + '\n')
        CRISPR = ''
    else:
        CRISPR = CRISPR + l.strip()
iFile.close()
oFile.close()
labelFile.close()
<mask token>
print(f'{cata} put in catagories.')
print(f'{others} Put in other catagory.')

<mask token>
MIN_SIZE = 4000
iFile = open('completeCRISPRs.txt', 'r')
oFile = open('CRISPR_' + str(MIN_SIZE) + '_catagorized.csv', 'w')
labelFile = open('CRISPR_labels_' + str(MIN_SIZE) + '.csv', 'w')
CRISPR = ''
types = {'Fusobacterium nucleatum subsp. animalis 7_1': 'Type I-B',
    'Aggregatibacter actinomycetemcomitans D7S-1': 'Type I-C',
    'Fusobacterium nucleatum subsp. vincentii 3_1_27': 'Type II-A',
    'Pseudomonas aeruginosa PACS2 chromosome': 'Type I-F',
    'Streptococcus suis 05HAS68': 'Type II-C',
    'Campylobacter jejuni subsp. jejuni CG8421': 'Type II-C',
    'Verrucomicrobium spinosum DSM 4136': 'Type III-B',
    'Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20':
    'Type I-E', 'Mycobacterium tuberculosis W-148': 'Type III-A',
    'Hydrogenobaculum sp. 3684': 'Type I-B', 'Hydrogenobaculum sp. SHO':
    'Type I-B', 'Pseudomonas aeruginosa 19BR chromosome': 'Type I-C',
    'Pseudomona aeruginosa 213BR chromosome': 'Type I-C',
    'Halobiforma lacisalsi AJ5 plasmid pHLAJ5I': 'Type I-B',
    'Halobacterium sp. DL1 plasmid': 'Type I-B', 'Halobacterium sp. DL1':
    'Type I-B', 'Opitutaceae bacterium TAV5': 'Type V-B',
    'Niabella soli DSM 19437': 'Type II-C',
    'Sulfolobus islandicus M.16.2 chromosome': 'Type I-A',
    'Sulfolobus islandicus M.16.40 chromosome': 'Type I-A',
    'Sulfolobus islandicus M.16.41 chromosome': 'Type I-A',
    'Sulfolobus islandicus M.16.47 chromosome': 'Type I-A',
    'Serratia plymuthica PRI-2C': 'Type I-F',
    'Streptomyces globisporus C-1027 plasmid SGLP1': 'Type I-C',
    'Escherichia coli str. K-12 substr. MG1655 strain K-12': 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Newport str. Levine 1':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Newport str. Levine 15':
    'Type I-E', 'Pseudomonas aeruginosa SJTD-1': 'Type I-F',
    'Salmonella enterica subsp. enterica serovar Newport str. CVM 21550':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Newport str. CVM 22513':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Newport str. CVM 21538':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Newport str. CVM 22425':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Newport str. CVM N18486':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Newport str. CVM N1543':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Newport str. CVM 22462':
    'Type I-E',
    'Escherichia coli str. K-12 substr. MG1655 strain K-12 chromosome':
    'Type I-E', 'Streptococcus pyogenes HKU QMH11M0907901 chromosome':
    'Type I-C',
    'Salmonella enterica subsp. enterica serovar Enteritidis str. 77-1427':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_0968'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Gallinarum str. 9184':
    'Type I-E', 'Streptococcus suis YB51': 'Type II-C',
    'Bacteroidales bacterium CF': 'Type II-C', 'Synechocystis sp. PCC 6714':
    'Type III-B', 'Synechocystis sp. PCC 6714 plasmid pSYLA': 'Type III-B',
    'Synechocystis sp. PCC 6714 plasmid pSYLB': 'Type I-A',
    'Salmonella enterica subsp. enterica serovar Newport str. WA_14882':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Agona str. 460004 2-1':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Heidelberg str. SARA35':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. SARA13':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Thompson str. ATCC 8391':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Tennessee str. TXSC_TXSC08-19'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Sloterdijk str. ATCC 15791':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 11511':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Minnesota str. ATCC 49284':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Muenster str. 0315 strain 315'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Inverness str. ATCC 10720':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Albany str. ATCC 51960':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Anatum str. ATCC BAA-1592':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Bredeney str. CFSAN001080':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 strain SARB61'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Agona str. 392869-2':
    'Type I-E', 'Escherichia coli str. K-12 substr. MC4100 complete genome':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002064':
    'Type I-E', 'Pasteurella multocida subsp. multocida str. HB03':
    'Type II-C', 'Erwinia amylovora LA637 chromosome VII': 'Type I-E',
    'Barnesiella viscericola DSM 18177': 'Type II-C',
    'Thermococcus sp. ES1': 'Type I-B', 'Chania multitudinisentens RB-25':
    'Type I-F', 'Mannheimia varigena USDA-ARS-USMARC-1296': 'Type I-C',
    'Mannheimia varigena USDA-ARS-USMARC-1388': 'Type I-C',
    'Mannheimia varigena USDA-ARS-USMARC-1312': 'Type I-C',
    'Bibersteinia trehalosi USDA-ARS-USMARC-190': 'Type I-C',
    'Corynebacterium falsenii DSM 44353 strain BL 8171': 'Type I-E',
    'Corynebacterium casei LMG S-19264': 'Type I-E',
    'Listeria monocytogenes WSLC1001': 'Type II-A',
    'Sulfurospirillum multivorans DSM 12446': 'Type I-B',
    'Bifidobacterium breve NCFB 2258': 'Type I-C',
    'Bifidobacterium breve S27': 'Type I-C',
    'Mycobacterium tuberculosis HKBS1': 'Type III-A',
    'Mycobacterium tuberculosis BT2': 'Type III-A',
    'Mycobacterium tuberculosis BT1': 'Type III-A',
    'Mycobacterium tuberculosis CCDC5180': 'Type III-A',
    'Granulibacter bethesdensis CGDNIH4': 'Type I-E',
    'Campylobacter coli RM4661': 'Type II-C',
    'Thermococcus nautili strain 30-1': 'Type I-B', 'Hafnia alvei FB1':
    'Type I-F', 'Paenibacillus polymyxa SQR-21': 'Type I-C',
    'Trueperella pyogenes strain TP6375': 'Type I-E',
    'Castellaniella defragrans 65Phen complete genome': 'Type I-F',
    'Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120005':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110361':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110360':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110357':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110356':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120002':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110354':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120008':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110221':
    'Type I-E', 'Klebsiella michiganensis strain HKOPL1': 'Type I-F',
    'Rubrobacter radiotolerans strain RSPS-4': 'Type I-C',
    'Bifidobacterium animalis strain RH': 'Type I-U',
    'Klebsiella pneumoniae subsp. pneumoniae KPNIH27': 'Type I-E',
    'Pectobacterium atrosepticum strain JG10-08': 'Type I-F',
    'Halomonas campaniensis strain LS21': 'Type I-F',
    'Streptococcus equi subsp. zooepidemicus CY': 'Type I-C',
    'Mycobacterium tuberculosis K': 'Type III-A',
    'Salmonella bongori serovar 48:z41:-- str. RKS3044': 'Type I-E',
    'Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299':
    'Type I-C', 'Mucinivorans hirudinis complete genome': 'Type II-C',
    'Escherichia coli KLY': 'Type I-E', 'Palaeococcus pacificus DY20341':
    'Type I-B', 'Klebsiella pneumoniae subsp. pneumoniae PittNDM01':
    'Type I-E', 'Thermodesulfobacterium commune DSM 2178': 'Type I-A',
    'Riemerella anatipestifer CH3': 'Type II-C',
    'Campylobacter iguaniorum strain 1485E': 'Type I-B',
    'Flavobacterium psychrophilum strain CSF259-93': 'Type II-C',
    'Actinobacillus suis ATCC 33415': 'Type II-C',
    'Corynebacterium imitans strain DSM 44264': 'Type I-U',
    'Moraxella catarrhalis strain 25240': 'Type I-F',
    'Vibrio vulnificus strain 93U204': 'Type I-F',
    'Corynebacterium ureicelerivorans strain IMMIB RIV-230': 'Type I-E',
    'Yersinia pseudotuberculosis strain ATCC 6904': 'Type I-F',
    'Pasteurella multocida strain ATCC 43137': 'Type I-F',
    'Providencia stuartii strain ATCC 33672': 'Type I-F',
    'Flavobacterium psychrophilum FPG101': 'Type II-C',
    'Paenibacillus durus strain DSM 1735': 'Type I-C',
    'Lactobacillus salivarius strain JCM1046': 'Type III-A',
    'Paenibacillus borealis strain DSM 13188': 'Type I-C',
    'Paenibacillus stellifer strain DSM 14472': 'Type I-C',
    'Campylobacter fetus subsp. venerealis 97/608': 'Type III-D',
    'Streptomyces glaucescens strain GLA.O plasmid pSglau1': 'Type I-E',
    'Methanobacterium formicicum strain BRM9': 'Type I-B',
    'Listeria ivanovii subsp. londoniensis strain WSLC 30151': 'Type I-B',
    'Moraxella catarrhalis strain 25239': 'Type I-F',
    'Flavobacterium psychrophilum strain 950106-1/1': 'Type II-C',
    'Fervidobacterium islandicum strain AW-1': 'Type I-B',
    'Corynebacterium ulcerans strain 210931': 'Type I-E',
    'Corynebacterium ulcerans strain 210932': 'Type I-E',
    'Corynebacterium ulcerans strain 05146': 'Type I-E',
    'Methylomonas denitrificans strain FJG1': 'Type I-E',
    'Geoglobus acetivorans strain SBH6': 'Type I-B',
    'Clostridium baratii str. Sullivan': 'Type I-B',
    'Escherichia coli ER2796': 'Type I-E',
    'Pseudomonas parafulva strain CRS01-1': 'Type I-F',
    'Parvimonas micra strain KCOM 1535': 'Type II-A',
    'Bifidobacterium kashiwanohense PV20-2': 'Type I-C',
    'Bifidobacterium pseudolongum PV8-2': 'Type I-U',
    'Candidatus Methanoplasma termitum strain MpT1': 'Type V-A',
    'Actinobacillus equuli subsp. equuli strain 19392': 'Type I-F',
    'Clostridium pasteurianum DSM 525 = ATCC 6013': 'Type I-B',
    'Halocynthiibacter arcticus strain PAMC 20958': 'Type I-C',
    'Coriobacteriaceae bacterium 68-1-3': 'Type I-C',
    'Streptomyces sp. 769': 'Type I-B',
    'Streptomyces sp. 769 plasmid pSGZL': 'Type I-E', 'Dickeya zeae EC1':
    'Type I-E', 'Trueperella pyogenes TP8': 'Type I-E',
    'Staphylococcus hyicus strain ATCC 11249': 'Type II-C',
    'Bifidobacterium animalis subsp. lactis KLDS2.0603': 'Type I-U',
    'Campylobacter sp. RM16704': 'Type II-C',
    'Campylobacter subantarcticus LMG 24374': 'Type II-C',
    'Campylobacter lari NCTC 11845': 'Type II-C',
    'Xanthomonas citri subsp. citri A306': 'Type I-C',
    'Bifidobacterium animalis strain A6': 'Type I-U',
    'Clostridium botulinum CDC_1436 plasmid pCBG': 'Type I-B',
    'Azotobacter chroococcum NCIMB 8003': 'Type I-E',
    'Pseudomonas balearica DSM 6083': 'Type I-E',
    'Bifidobacterium animalis subsp. lactis strain BF052': 'Type I-U',
    'Mannheimia haemolytica USDA-ARS-USMARC-184': 'Type I-C',
    'Streptomyces albus strain DSM 41398': 'Type I-E',
    'Mycobacterium tuberculosis H37RvSiena': 'Type III-A',
    'Geoalkalibacter subterraneus strain Red1': 'Type I-C',
    'Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1': 'Type IV',
    'Haloarcula sp. CBA1115': 'Type I-D',
    'Corynebacterium glutamicum strain B253': 'Type I-E',
    'Methanothermobacter sp. CaT2 DNA': 'Type I-B',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. L-3553':
    'Type I-E', 'Thiolapillus brandeum DNA': 'Type I-E',
    'Sulfuritalea hydrogenivorans sk43H DNA': 'Type II-C',
    'Thermotoga caldifontis AZM44c09 DNA': 'Type I-D',
    'Thioploca ingrica DNA': 'Type I-B', 'Burkholderia sp. RPE67 DNA':
    'Type I-E', 'Burkholderiales bacterium GJ-E10 DNA': 'Type II-C',
    'Mycobacterium tuberculosis str. Kurono DNA': 'Type III-A',
    'Chryseobacterium sp. StRB126 DNA': 'Type II-C',
    'Raoultella ornithinolytica strain S12': 'Type I-E',
    'Streptomyces vietnamensis strain GIM4.0001': 'Type I-E',
    'Streptococcus anginosus strain SA1': 'Type II-A',
    'Flavobacterium psychrophilum strain V4-24': 'Type II-C',
    'Flavobacterium psychrophilum strain V4-33': 'Type II-C',
    'Flavobacterium psychrophilum strain V3-5': 'Type II-C',
    'Mycobacterium tuberculosis H37Rv': 'Type III-A',
    'Streptococcus iniae strain YSFST01-82': 'Type II-A',
    'Escherichia coli ECC-1470': 'Type I-E',
    'Lactobacillus heilongjiangensis strain DSM 28069': 'Type II-A',
    'Thermotoga sp. RQ7': 'Type I-B',
    'Bacillus coagulans DSM 1 = ATCC 7050': 'Type I-C',
    'Francisella tularensis subsp. novicida D9876': 'Type II-B',
    'Corynebacterium singulare strain IBS B52218': 'Type I-E',
    'Yersinia frederiksenii Y225': 'Type I-F',
    'Yersinia pseudotuberculosis IP 32953': 'Type I-F',
    'Yersinia pseudotuberculosis YPIII': 'Type I-F',
    'Yersinia pseudotuberculosis strain EP2/+': 'Type I-F',
    'Yersinia pseudotuberculosis strain 1': 'Type I-F',
    'Yersinia pseudotuberculosis PB1/+': 'Type I-F',
    'Yersinia kristensenii strain Y231': 'Type I-F',
    'Yersinia pseudotuberculosis str. PA3606': 'Type I-F',
    'Bacillus coagulans strain HM-08': 'Type I-C',
    'Pseudomonas sp. MRSN12121': 'Type I-F',
    'Alteromonas australica strain DE170': 'Type I-F',
    'Propionibacterium freudenreichii subsp. freudenreichii strain DSM 20271':
    'Type I-U',
    'Salmonella enterica subsp. enterica serovar Anatum str. CDC 06-0532':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1903'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1899'
    : 'Type I-E', 'Amycolatopsis orientalis strain B-37': 'Type I-E',
    'Xanthomonas oryzae pv. oryzae PXO86': 'Type I-C',
    'Paenibacillus sp. IHBB 10380': 'Type I-B', 'Streptomyces lydicus A02':
    'Type I-E', 'Xenorhabdus nematophila AN6/1 genome assembly XNC2':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Infantis genome assembly SINFA'
    : 'Type I-E', 'Aliivibrio wodanis genome assembly AWOD1': 'Type I-F',
    'Moritella viscosa genome assembly MVIS1': 'Type I-F',
    'Elizabethkingia miricola strain BM10': 'Type II-C',
    'Lactobacillus helveticus strain KLDS1.8701': 'Type I-E',
    'Paenibacillus beijingensis strain DSM 24997': 'Type I-C',
    'Xanthomonas citri subsp. citri strain UI6': 'Type I-C',
    'Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1175'
    : 'Type I-E', 'Mannheimia haemolytica strain 89010807N': 'Type I-C',
    'Mannheimia haemolytica strain 89010807N lktA-': 'Type I-C',
    'Pseudomonas chlororaphis strain PCL1606': 'Type I-F',
    'Bifidobacterium angulatum strain GT102': 'Type II-A',
    'Campylobacter fetus subsp. venerealis str. 84-112': 'Type III-D',
    'Magnetospira sp. QH-2 chromosome': 'Type I-C',
    'Xenorhabdus poinarii str. G6 chromosome': 'Type I-E',
    'Xenorhabdus doucetiae str. FRM16 chromosome': 'Type I-E',
    'Escherichia coli VR50': 'Type I-E', 'Janthinobacterium sp. B9-8':
    'Type I-E', 'Methanococcoides methylutens MM1': 'Type I-B',
    'Sneathia sp. Sn35': 'Type V-A',
    'Pasteurella multocida subsp. multocida OH4807': 'Type I-F',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2011K-0870'
    : 'Type I-E', 'Escherichia coli K-12 strain ER3454': 'Type I-E',
    'Spirosoma radiotolerans strain DG5A': 'Type I-B',
    'Escherichia coli K-12 strain ER3440': 'Type I-E',
    'Escherichia coli K-12 strain ER3476': 'Type I-E',
    'Escherichia coli K-12 strain ER3475': 'Type I-E',
    'Corynebacterium camporealensis strain DSM 44610': 'Type II-C',
    'Sulfurovum lithotrophicum strain ATCC BAA-797': 'Type II-C',
    'Myxococcus fulvus 124B02': 'Type I-C',
    'Streptomyces xiamenensis strain 318': 'Type I-E',
    'Paenibacillus durus ATCC 35681': 'Type I-C',
    'Serratia fonticola strain DSM 4576': 'Type I-F',
    'Lactobacillus helveticus strain MB2-1': 'Type I-B',
    'Geoglobus ahangari strain 234': 'Type I-B',
    'Sedimenticola thiotaurini strain SIP-G1': 'Type II-C',
    'Dehalococcoides sp. UCH007 DNA': 'Type I-E',
    'Streptomyces sp. CNQ-509': 'Type I-E',
    'Halanaeroarchaeum sulfurireducens strain HSR2': 'Type I-B',
    'Corynebacterium mustelae strain DSM 45274': 'Type I-E',
    'Corynebacterium uterequi strain DSM 45634': 'Type I-E',
    'Chryseobacterium gallinarum strain DSM 27622': 'Type II-C',
    'Bifidobacterium angulatum DSM 20098 = JCM 7096 DNA': 'Type I-E',
    'Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 DNA':
    'Type I-E',
    'Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 DNA':
    'Type I-C', 'Pragia fontium strain 24613': 'Type I-F',
    'Xanthomonas citri pv. citri strain jx-6': 'Type I-C',
    'Bacillus coagulans strain S-lac': 'Type I-C',
    'Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA': 'Type I-E',
    'Gardnerella vaginalis ATCC 14018 = JCM 11026 DNA': 'Type I-E',
    'Parascardovia denticolens DSM 10105 = JCM 12538 DNA': 'Type I-C',
    'Scardovia inopinata JCM 12537 DNA': 'Type II-C',
    'Clostridium aceticum strain DSM 1496': 'Type I-B',
    'Pseudomonas aeruginosa DSM 50071': 'Type I-F',
    'Marinovum algicola DG 898': 'Type II-C',
    'Bacillus smithii strain DSM 4216': 'Type I-B',
    'Lactobacillus koreensis strain 26-25': 'Type I-E',
    'Riemerella anatipestifer strain 153': 'Type VI-B',
    'Nocardia farcinica genome assembly NCTC11134': 'Type I-E',
    "Leptospirillum sp. Group II 'CF-1'": 'Type I-E',
    'Anoxybacillus gonensis strain G2': 'Type I-B',
    'Listeria monocytogenes strain LM850658': 'Type I-B',
    'Staphylococcus schleiferi strain 1360-13': 'Type II-C',
    'Staphylococcus schleiferi strain 5909-02': 'Type II-C',
    'Staphylococcus schleiferi strain 2317-03': 'Type II-C',
    'Olsenella sp. oral taxon 807 strain F0089': 'Type I-C',
    'Luteipulveratus mongoliensis strain MN07-A0370 genome': 'Type I-E',
    'Prevotella fusca JCM 17724 strain W1435 chromosome 2': 'Type II-C',
    'Ottowia sp. oral taxon 894 strain W10237': 'Type II-C',
    'Microcystis panniformis FACHB-1757': 'Type I-D',
    'Chelatococcus sp. CO-6': 'Type I-C',
    'Nitrospira moscoviensis strain NSP M-1': 'Type I-A',
    'Leptotrichia sp. oral taxon 212 strain W10393': 'Type I-B',
    'Cronobacter muytjensii ATCC 51329': 'Type I-F',
    'Corynebacterium deserti GIMN1.010': 'Type I-E',
    'Streptomyces sp. CFMR 7 strain CFMR-7': 'Type I-E',
    'Streptomyces sp. CFMR 7 strain CFMR-7 plasmid': 'Type I-E',
    'Capnocytophaga sp. oral taxon 323 strain F0383': 'Type II-C',
    'Bifidobacterium longum subsp. infantis strain BT1': 'Type I-C',
    'Bifidobacterium longum strain BG7': 'Type II-C',
    'Fusobacterium nucleatum subsp. animalis strain KCOM 1279': 'Type I-B',
    'Megasphaera elsdenii 14-14': 'Type I-C',
    'Clostridium perfringens strain FORC_003': 'Type II-C',
    'Confluentimicrobium sp. EMB200-NS6': 'Type I-E',
    'Halanaeroarchaeum sulfurireducens strain M27-SA2': 'Type I-B',
    'Salmonella enterica subsp. enterica serovar Thompson strain RM1984':
    'Type I-E', 'Lactobacillus helveticus strain CAUH18': 'Type I-C',
    'Microbacterium sp. No. 7': 'Type I-E',
    'Lactobacillus gallinarum strain HFD4': 'Type I-C',
    'Azospirillum brasilense strain Sp7': 'Type I-C',
    'Acinetobacter baumannii strain D36': 'Type I-F',
    'Salmonella enterica subsp. enterica serovar Weltevreden genome assembly 10259'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Weltevreden genome assembly 98_11262'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Weltevreden genome assembly C2346'
    : 'Type I-E', 'Burkholderia plantarii strain ATCC 43733 chromosome 1':
    'Type I-F', 'Streptococcus anginosus strain J4211': 'Type II-C',
    'Fusobacterium nucleatum subsp. polymorphum strain ChDC F306':
    'Type III-A', 'Aneurinibacillus sp. XH2': 'Type I-B',
    'Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374':
    'Type I-E', 'Staphylococcus agnetis strain 908': 'Type II-C',
    'Salmonella enterica subsp. enterica serovar Anatum strain GT-01':
    'Type I-E', 'Marinobacter sp. LQ44': 'Type I-C',
    'Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_020':
    'Type I-E', 'Fusobacterium hwasookii ChDC F300': 'Type III-A',
    'Clostridium butyricum strain KNU-L09 chromosome 2': 'Type I-B',
    'Salmonella enterica subsp. enterica serovar Senftenberg genome assembly NCTC10384'
    : 'Type I-E', 'Methanobacterium formicicum genome assembly isolate Mb9':
    'Type I-B',
    'Helicobacter typhlonius genome assembly htyphlonius_mit97-6810':
    'Type II-C',
    'Actinobacillus pleuropneumoniae serovar 8 genome assembly MIDG2331':
    'Type I-F', 'Clostridium butyricum strain JKY6D1 chromosome 2':
    'Type I-B', 'Paenibacillus naphthalenovorans strain 32O-Y': 'Type I-C',
    'Rathayibacter toxicus strain WAC3373': 'Type I-E',
    'Vibrio alginolyticus strain ATCC 33787 plasmid pMBL287': 'Type I-F',
    'Streptococcus gallolyticus strain ICDDRB-NRC-S1': 'Type II-C',
    'Methanobrevibacter millerae strain SM9': 'Type III-A',
    'Eubacterium limosum strain SA11': 'Type I-B',
    'Pseudoalteromonas rubra strain SCSIO 6842 chromosome 2': 'Type I-C',
    'Clostridium autoethanogenum DSM 10061': 'Type I-B',
    'Halobacterium sp. JI20-1 genome assembly Halobacterium hubeiense JI20-1':
    'Type I-B', 'Pseudomonas aeruginosa strain W36662': 'Type I-F',
    'Pseudomonas aeruginosa strain H27930': 'Type I-F',
    'Pseudomonas aeruginosa strain M37351': 'Type I-F',
    'Aerococcus urinaeequi strain USDA-ARS-USMARC-56713': 'Type I-E',
    'Leclercia adecarboxylata strain USDA-ARS-USMARC-60222': 'Type I-F',
    'Xanthomonas oryzae pv. oryzae strain PXO83': 'Type I-C',
    'Corynebacterium glutamicum strain USDA-ARS-USMARC-56828': 'Type I-U',
    'Klebsiella pneumoniae subsp. pneumoniae strain RJF999': 'Type I-E',
    'Kurthia sp. 11kri321': 'Type I-B',
    'Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001387':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Typhimurium isolate SO4698-09 genome assembly'
    : 'Type I-E', 'Aerococcus sanguinicola strain CCUG43001': 'Type I-E',
    'Aerococcus urinae strain CCUG36881': 'Type I-E',
    'Aerococcus urinaehominis strain CCUG42038B': 'Type I-E',
    'Turicibacter sp. H121': 'Type II-C',
    'Mycobacterium tuberculosis strain F28': 'Type III-A',
    'Mycobacterium tuberculosis strain 22115': 'Type III-A',
    'Thermosulfidibacter takaii ABI70S6 DNA': 'Type I-B',
    'Pseudomonas aeruginosa DNA': 'Type I-F',
    'Sulfurospirillum cavolei DNA': 'Type I-B', 'Rothia mucilaginosa DNA':
    'Type I-U', 'Listeria monocytogenes strain 2015TE19005-1355':
    'Type II-A', 'Actinomyces oris strain T14V': 'Type I-U',
    'Moraxella osloensis strain CCUG 350': 'Type I-F',
    'Burkholderia sp. PAMC 26561 chromosome 1': 'Type I-C',
    'Methanogenic archaeon ISO4-H5': 'Type I-E', 'Desulfovibrio sp. J2':
    'Type I-C', 'Burkholderia sp. PAMC 28687 strain PAMC28687 chromosome 1':
    'Type I-E', 'Martelella sp. AD-3': 'Type I-C',
    'Pasteurella multocida subsp. multocida PMTB2.1': 'Type I-F',
    'Steroidobacter denitrificans strain DSM 18526': 'Type I-C',
    'Corynebacterium simulans strain PES1': 'Type I-E',
    'Corynebacterium simulans strain Wattiau': 'Type I-E',
    'Zhongshania aliphaticivorans strain SM2': 'Type I-F',
    'Ralstonia solanacearum strain IBSBF1503': 'Type I-E',
    'Pedobacter cryoconitis strain PAMC 27485': 'Type II-C',
    'Legionella pneumophila subsp. pneumophila strain Toronto-20052':
    'Type I-C', 'Pseudomonas aeruginosa strain F63912': 'Type I-E',
    'Propionibacterium acidipropionici strain ATCC 55737': 'Type I-U',
    'Pseudomonas aeruginosa strain N17-1': 'Type I-C',
    'Dehalococcoides mccartyi strain 11a5': 'Type I-E',
    'Klebsiella pneumoniae subsp. pneumoniae strain TGH8': 'Type I-E',
    'Klebsiella pneumoniae subsp. pneumoniae strain TGH10': 'Type I-E',
    'Pediococcus damnosus strain TMW 2.1536': 'Type II-A',
    'Desulfuromonas sp. DDH964': 'Type I-C',
    'Salmonella enterica subsp. enterica serovar Weltevreden str. 1655':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1736'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1676'
    : 'Type I-E', 'Defluviimonas alba strain cai42 plasmid cai42_plasmidC':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1728'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1766'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2010K-1587'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1781'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1880'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1896'
    : 'Type I-E', 'Geobacter anodireducens strain SD-1': 'Type I-E',
    'Salmonella enterica subsp. diarizonae strain 11-01853': 'Type I-E',
    'Rhodovulum sulfidophilum DSM 1374': 'Type I-E',
    'Anoxybacillus sp. B2M1': 'Type I-B', 'Anoxybacillus sp. B7M1':
    'Type I-B', 'Acinetobacter baumannii strain 3207': 'Type I-F',
    'Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260':
    'Type I-B', 'Escherichia coli strain 2011C-3911': 'Type I-E',
    'Klebsiella pneumoniae strain SKGH01': 'Type I-E',
    'Clostridium butyricum strain TOA chromosome 2': 'Type I-B',
    'Klebsiella pneumoniae strain AATZP': 'Type I-E',
    'Streptomyces sp. RTd22': 'Type I-B', 'Marinobacterium sp. ST58-10':
    'Type III-B', 'Streptomyces sp. SAT1': 'Type I-E',
    'Pasteurella multocida subsp. multocida HB01': 'Type I-F',
    'Klebsiella pneumoniae strain Kpn223': 'Type I-E',
    'Lactobacillus backii strain TMW 1.1988': 'Type II-C',
    'Lactobacillus backii strain TMW 1.1991': 'Type II-C',
    'Lactobacillus backii strain TMW 1.1992': 'Type II-C',
    'Escherichia coli strain 09-00049': 'Type I-E',
    'Escherichia coli strain GB089': 'Type I-E',
    'Streptococcus thermophilus strain CS8': 'Type II-C',
    'Prosthecochloris sp. CIB 2401': 'Type I-E',
    'Planococcus antarcticus DSM 14505': 'Type II-C',
    'Bifidobacterium animalis subsp. animalis strain YL2': 'Type I-E',
    'Lachnoclostridium sp. YL32': 'Type I-C',
    'Akkermansia muciniphila strain YL44': 'Type I-C',
    'Burkholderiales bacterium YL45': 'Type II-B',
    'Salmonella enterica subsp. enterica serovar Heidelberg strain SH12-007':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Heidelberg strain SH12-003':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Heidelberg strain 11-004736-1-7'
    : 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Heidelberg strain CE-R2-11-0435'
    : 'Type I-E', 'Aggregatibacter actinomycetemcomitans strain IDH781':
    'Type I-C',
    'Salmonella enterica subsp. enterica serovar Heidelberg strain A3EZ223':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Heidelberg strain AMR588-04-00437'
    : 'Type I-E', 'Synechococcus sp. PCC 7003 plasmid unnamed2':
    'Type III-B', 'Synechococcus sp. PCC 7117 plasmid unnamed5': 'Type I-D',
    'Neisseria meningitidis strain DE10444': 'Type II-C',
    'Neisseria meningitidis strain M22819': 'Type II-C',
    'Neisseria meningitidis strain M22809': 'Type II-C',
    'Neisseria meningitidis strain M22811': 'Type II-C',
    'Neisseria meningitidis strain M22804': 'Type II-C',
    'Neisseria meningitidis strain M22828': 'Type II-C',
    'Neisseria meningitidis strain M22822': 'Type II-C',
    'Neisseria meningitidis strain M24705': 'Type II-C',
    'Bordetella pseudohinzii strain HI4681': 'Type II-C',
    'Lactobacillus helveticus strain D76': 'Type I-B',
    'Lactobacillus lindneri strain TMW 1.1993': 'Type II-A',
    'Salmonella enterica subsp. enterica serovar Typhimurium strain NC983':
    'Type I-E', 'Xanthomonas fragariae isolate Fap29': 'Type I-F',
    'Xanthomonas fragariae isolate Fap21': 'Type I-F',
    'Klebsiella pneumoniae strain ED23': 'Type I-E',
    'Cutibacterium avidum strain DPC 6544': 'Type I-E',
    'Acidovorax sp. RAC01': 'Type I-C',
    'Lactobacillus johnsonii strain BS15': 'Type II-A',
    'Anaerolineaceae bacterium oral taxon 439 strain W11661': 'Type I-C',
    'Selenomonas sp. oral taxon 920 strain W5150': 'Type I-C',
    'Campylobacter coli strain 14983A': 'Type II-C',
    'Campylobacter jejuni subsp. jejuni strain 14980A': 'Type II-C',
    'Bifidobacterium longum strain 35624': 'Type I-C',
    'Pseudomonas aeruginosa strain PA_D1': 'Type I-F',
    'Pseudomonas aeruginosa strain PA_D2': 'Type I-F',
    'Pseudomonas aeruginosa strain PA_D9': 'Type I-F',
    'Pseudomonas aeruginosa strain PA_D21': 'Type I-F',
    'Pseudomonas aeruginosa strain PA_D22': 'Type I-F',
    'Pseudomonas aeruginosa strain PA_D25': 'Type I-F',
    'Pasteurella multocida strain Pm-3': 'Type I-F',
    'Pseudomonas aeruginosa strain PA_D5': 'Type I-F',
    'Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931':
    'Type I-F', 'Enterobacter hormaechei subsp. oharae strain DSM 16687':
    'Type I-F', 'Lactobacillus fermentum strain NCC2970': 'Type II-A',
    'Klebsiella pneumoniae subsp. pneumoniae strain TGH13': 'Type I-E',
    'Xanthomonas oryzae pv. oryzae strain PXO71': 'Type I-C',
    'Xanthomonas oryzae pv. oryzae strain PXO145': 'Type I-C',
    'Xanthomonas oryzae pv. oryzae strain PXO211': 'Type I-C',
    'Xanthomonas oryzae pv. oryzae strain PXO236': 'Type I-C',
    'Xanthomonas oryzae pv. oryzae strain PXO563': 'Type I-C',
    'Xanthomonas oryzae pv. oryzae strain PXO602': 'Type I-C',
    'Pseudoalteromonas luteoviolacea strain S4054249 chromosome 2':
    'Type I-F', 'Pseudoalteromonas luteoviolacea strain S4054 chromosome 2':
    'Type I-F',
    'Pseudoalteromonas luteoviolacea strain S40542 chromosome 2':
    'Type I-F', 'Geosporobacter ferrireducens strain IRF9': 'Type I-B',
    'Streptomyces rubrolavendulae strain MJM4426': 'Type I-E',
    'Neisseria meningitidis strain 331401': 'Type II-C',
    'Escherichia coli strain FORC_031': 'Type I-E',
    'Legionella pneumophila strain Philadelphia_1_ATCC': 'Type II-B',
    'Legionella pneumophila strain Philadelphia_4': 'Type II-B',
    'Legionella pneumophila strain Philadelphia_2': 'Type II-B',
    'Legionella pneumophila subsp. pneumophila strain FFI102': 'Type I-F',
    'Legionella pneumophila subsp. pneumophila strain FFI103': 'Type I-F',
    'Legionella pneumophila subsp. pneumophila strain FFI104': 'Type I-F',
    'Legionella pneumophila subsp. pneumophila strain FFI105': 'Type I-F',
    'Pediococcus acidilactici strain ZPA017': 'Type II-A',
    'Pseudomonas aeruginosa strain PA1088': 'Type I-C',
    'Pseudomonas aeruginosa strain PA8281': 'Type I-C',
    'Flavobacterium sp. LPB0076': 'Type II-C', 'Psychrobacter sp. AntiMn-1':
    'Type I-C', 'Clostridium formicaceticum strain ATCC 27076': 'Type I-B',
    'Chromobacterium vaccinii strain 21-1': 'Type I-E',
    'Klebsiella pneumoniae strain KP5': 'Type I-E',
    'Propionibacterium acidipropionici strain F3E8': 'Type I-U',
    'Clostridium pasteurianum DSM 525 = ATCC 6013': 'Type I-B',
    'Clostridium pasteurianum strain M150B': 'Type I-B',
    'Bacillus coagulans strain BC-HY1': 'Type I-B',
    'Klebsiella pneumoniae strain CAV1016': 'Type I-E',
    'Pseudomonas aeruginosa strain PA7790': 'Type I-C',
    'Paenibacillus polymyxa strain YC0573': 'Type I-C',
    'Vibrio parahaemolyticus strain FORC_022 chromosome 2': 'Type I-F',
    'Lactobacillus plantarum strain MF1298': 'Type II-A',
    'Klebsiella pneumoniae strain Kp_Goe_822579': 'Type I-E',
    'Alteromonas mediterranea strain CP48': 'Type I-F',
    'Alteromonas mediterranea strain CP49': 'Type I-F', 'Delftia sp. HK171':
    'Type I-F', 'Clostridium butyricum strain CDC_51208 plasmid pNPD4_2':
    'Type I-B', 'Chelatococcus daeguensis strain TAD1': 'Type I-C',
    'Pelobacter acetylenicus strain DSM 3246': 'Type I-E',
    'Lactobacillus delbrueckii subsp. delbrueckii strain KCTC 13731':
    'Type II-A', 'Lactobacillus delbrueckii subsp. lactis strain KCTC 3035':
    'Type I-C', 'Clostridium botulinum strain CDC_1632': 'Type I-B',
    'Granulibacter bethesdensis strain NIH1.4': 'Type I-E',
    'Granulibacter bethesdensis strain NIH5.1': 'Type I-E',
    'Granulibacter bethesdensis strain NIH6.1': 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Newport strain CFSAN003890':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Newport strain CFSAN003387':
    'Type I-E', 'Marinilactibacillus sp. 15R': 'Type I-C',
    'Mycobacterium tuberculosis strain I0004241-1': 'Type III-A',
    'Mycobacterium tuberculosis strain M0018684-2': 'Type III-A',
    'Mycobacterium tuberculosis strain I0004000-1': 'Type III-A',
    'Acinetobacter baumannii strain AF-401': 'Type I-F',
    'Escherichia coli strain C1': 'Type I-E', 'Escherichia coli strain D7':
    'Type I-E', 'Escherichia coli strain H5': 'Type I-E',
    'Escherichia coli strain C2': 'Type I-E', 'Escherichia coli strain D1':
    'Type I-E', 'Escherichia coli strain D8': 'Type I-E',
    'Escherichia coli strain D10': 'Type I-E', 'Escherichia coli strain H3':
    'Type I-E', 'Escherichia coli strain S40': 'Type I-E',
    'Escherichia coli strain M1': 'Type I-E', 'Escherichia coli strain M3':
    'Type I-E', 'Escherichia coli strain M8': 'Type I-E',
    'Paenibacillus xylanexedens strain PAMC 22703': 'Type I-C',
    'Lactobacillus delbrueckii subsp. indicus strain JCM 15610': 'Type I-E',
    'Klebsiella pneumoniae strain Kp_Goe_149473': 'Type I-E',
    'Klebsiella pneumoniae strain Kp_Goe_827024': 'Type I-E',
    'Klebsiella pneumoniae strain Kp_Goe_827026': 'Type I-E',
    'Klebsiella pneumoniae strain Kp_Goe_152021': 'Type I-E',
    'Klebsiella pneumoniae strain KP_Goe_828304': 'Type I-E',
    'Klebsiella pneumoniae strain Kp_Goe_149832': 'Type I-E',
    'Maribacter sp. T28': 'Type II-C',
    'Xanthomonas citri pv. citri strain LL074-4': 'Type I-C',
    'Xanthomonas citri pv. citri strain LH276': 'Type I-C',
    'Xanthomonas citri pv. citri strain LJ207-7': 'Type I-C',
    'Pediococcus acidilactici strain BCC1': 'Type II-A',
    'Mycobacterium tuberculosis strain DK9897': 'Type III-A',
    'Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Infantis strain N55391':
    'Type I-E', 'Streptomyces sp. Tue6075': 'Type I-E',
    'Klebsiella pneumoniae strain ATCC 35657': 'Type I-E',
    'Lactobacillus jensenii strain SNUV360': 'Type II-A',
    'Lactobacillus amylophilus DSM 20533 = JCM 1125': 'Type I-E',
    'Campylobacter coli strain YH502': 'Type II-C',
    'Escherichia coli strain 2016C-3936C1': 'Type I-E',
    'Mycobacterium tuberculosis H37Ra': 'Type III-A',
    'Xanthomonas citri pv. citri strain LM199 chromosome': 'Type I-C',
    'Xanthomonas citri pv. citri strain LM180 chromosome': 'Type I-C',
    'Salmonella enterica subsp. enterica serovar Cerro strain 87':
    'Type I-E', 'Corynebacterium flavescens strain OJ8': 'Type I-U',
    'Corynebacterium frankenforstense DSM 45800 strain ST18': 'Type I-E',
    'Corynebacterium phocae strain M408/89/1': 'Type I-E',
    'Lactobacillus fermentum strain SNUV175': 'Type I-E',
    'Acinetobacter junii strain 65': 'Type I-F',
    'Pseudomonas alcaliphila JAB1': 'Type I-F',
    'Klebsiella pneumoniae strain CN1': 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN004175':
    'Type I-E',
    'Lactobacillus delbrueckii subsp. bulgaricus strain DSM 20080':
    'Type II-A', 'Prevotella intermedia strain strain 17 chromosome I':
    'Type IV-B', 'Prevotella intermedia strain strain 17 chromosome II':
    'Type II-C',
    'Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome I'
    : 'Type II-C*',
    'Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome II'
    : 'Type IV-B', 'Klebsiella pneumoniae strain 825795-1': 'Type I-E',
    'Paludisphaera borealis strain PX4': 'Type I-C',
    'Mycobacterium tuberculosis strain 6548 chromosome': 'Type III-A',
    'Salmonella enterica subsp. enterica serovar Senftenberg strain 775W':
    'Type I-E', 'Halomonas sp. 1513': 'Type I-E',
    'Winogradskyella sp. J14-2': 'Type II-C', 'Seonamhaeicola sp. S2-3':
    'Type II-C', 'Kosakonia cowanii strain 888-76': 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Apapa str. SA20060561':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Bergen str. ST350':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536':
    'Type I-E',
    'Salmonella enterica subsp. enterica serovar Wandsworth str. SA20092095':
    'Type I-E', 'Jeotgalibaca sp. PTS2502': 'Type II-C',
    'Pelagibaca abyssi strain JLT2014': 'Type I-E',
    'Acidihalobacter ferrooxidans strain V8 genome': 'Type I-U',
    'Streptococcus oralis strain S.MIT/ORALIS-351': 'Type III-A',
    'Streptomyces autolyticus strain CGMCC0516': 'Type I-E',
    'Lactobacillus rhamnosus strain BFE5264': 'Type II-A',
    'Spirosoma montaniterrae strain DY10': 'Type I-B',
    'Salmonella enterica subsp. enterica serovar Typhimurium strain 81741':
    'Type I-E', 'Tessaracoccus sp. NSG39': 'Type I-E',
    'Mycobacterium tuberculosis TRS9 genome': 'Type III-A',
    'Mycobacterium tuberculosis 1821ADB35 genome': 'Type III-A',
    'Mycobacterium tuberculosis 1821ADB36 genome': 'Type III-A',
    'Mycobacterium tuberculosis 1821ADB37 genome': 'Type III-A',
    'Mycobacterium tuberculosis 1821ADB38 genome': 'Type III-A',
    'Mycobacterium tuberculosis 1821ADB40 genome': 'Type III-A',
    'Mycobacterium tuberculosis 1821ADB41 genome': 'Type III-A',
    'Mycobacterium tuberculosis 1821ADB44 genome': 'Type III-A',
    'Mycobacterium tuberculosis 1821ADB45 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS1 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS10 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS11 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS12 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS13 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS14 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS15 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS16 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS17 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS18 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS19 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS20 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS21 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS22 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS23 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS24 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS25 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS26 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS27 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS28 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS29 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS2 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS3 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS4 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS5 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS6 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS7 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS8 genome': 'Type III-A',
    'Mycobacterium tuberculosis TRS9 genome': 'Type III-A',
    'Tessaracoccus flavescens strain SST-39T': 'Type I-E',
    'Listeria monocytogenes strain 10-092876-0168': 'Type II-A',
    'Listeria monocytogenes strain 10-092876-1763 LM10': 'Type I-B',
    'Clostridium saccharobutylicum strain NCP 200': 'Type I-B',
    'Clostridium saccharoperbutylacetonicum strain N1-504': 'Type I-B',
    'Clostridium saccharobutylicum strain BAS/B3/SW/136': 'Type I-B',
    'Clostridium saccharobutylicum strain NCP 258': 'Type I-B',
    'Clostridium saccharobutylicum strain NCP 195': 'Type I-B',
    'Veillonella parvula strain UTDB1-3': 'Type III-D',
    'Streptomyces pactum strain ACT12': 'Type I-E',
    'Bartonella apis strain BBC0178': 'Type II-C',
    'Bartonella apis strain BBC0244': 'Type II-C', 'Cellvibrio sp. PSBB023':
    'Type I-E', 'Clostridioides difficile strain BR81': 'Type I-B',
    'Salmonella enterica subsp. enterica serovar Typhimurium strain RM10607':
    'Type I-E', "Halomonas sp. 'Soap Lake #7'": 'Type I-C',
    'Escherichia coli strain Ecol_224': 'Type I-E',
    'Escherichia coli strain Ecol_545': 'Type I-E',
    'Escherichia coli strain Ecol_881': 'Type I-E',
    'Clostridium perfringens strain CP15 genome': 'Type I-B',
    'Dehalococcoides mccartyi strain KBDCA3': 'Type I-C',
    'Elizabethkingia meningoseptica strain G4076': 'Type II-C',
    'Dehalococcoides mccartyi strain KBVC1': 'Type I-E',
    'Streptococcus agalactiae strain Sag158,': 'Type II-A',
    'Listeria monocytogenes strain ICDC-LM188': 'Type II-A',
    'Escherichia coli strain AR_0118': 'Type I-E', 'Pseudomonas sp. S-6-2':
    'Type I-E', 'Comamonas kerstersii strain 8943': 'Type I-E',
    'Spirosoma aerolatum strain KACC 17939': 'Type I-B',
    'Streptococcus suis ST3 chromosome': 'Type II-C',
    'Sulfolobus acidocaldarius N8': 'Type I-D',
    'Hyphomicrobium nitrativorans NL23': 'Type I-C',
    'Listeria monocytogenes M7 chromosome': 'Type I-B',
    'Ralstonia solanacearum Po82 chromosome': 'Type I-E',
    'Microlunatus phosphovorus NM-1': 'Type III-D',
    'Halorhabdus tiamatea SARL4B complete genome.': 'Type I-B',
    'Bifidobacterium longum subsp. longum KACC 91563 chromosome':
    'Type II-C', 'Candidatus Arthromitus sp. SFB-rat-Yit': 'Type I-C',
    'Clostridium sp. SY8519': 'Type I-E',
    'Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome':
    'Type I-U', 'Pseudoxanthomonas spadix BD-a59': 'Type I-C',
    'Streptococcus salivarius 57.I chromosome': 'Type I-E',
    'Mycobacterium canettii CIPT 140010059': 'Type III-A',
    'Streptococcus salivarius CCHSS3': 'Type I-E',
    'Streptococcus equi subsp. zooepidemicus ATCC 35246 chromosome':
    'Type I-C', 'Methanococcus maripaludis XI chromosome': 'Type I-B',
    'Salmonella enterica subsp. enterica serovar Thompson str. RM6836':
    'Type I-E', 'Pasteurella multocida 36950 chromosome': 'Type I-F',
    'Bifidobacterium animalis subsp. lactis BLC1': 'Type I-U',
    'Melissococcus plutonius DAT561 chromosome 1': 'Type I-C',
    'Mycobacterium tuberculosis RGTB327 chromosome': 'Type III-A',
    'Mycobacterium tuberculosis RGTB423 chromosome': 'Type III-A',
    'Burkholderia sp. YI23 chromosome 2': 'Type I-E',
    'Tistrella mobilis KA081020-065 plasmid pTM1': 'Type III-D',
    'Methanosaeta harundinacea 6Ac chromosome': 'Type III-B',
    'Gordonia polyisoprenivorans VH2 chromosome': 'Type I-U',
    'Streptococcus macedonicus ACA-DC 198': 'Type II-C',
    'Salmonella enterica subsp. enterica serovar Heidelberg str. 41578':
    'Type I-E',
    'Pasteurella multocida subsp. multocida str. HN06 chromosome':
    'Type I-F',
    'Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1':
    'Type I-E', 'Escherichia coli O104:H4 str. 2009EL-2071 chromosome':
    'Type I-E', 'Cronobacter sakazakii ES15 chromosome': 'Type I-E',
    'Mycobacterium tuberculosis 7199-99 complete genome.': 'Type III-A',
    'Phycisphaera mikurensis NBRC 102666': 'Type I-C',
    'Bifidobacterium asteroides PRL2011 chromosome': 'Type I-E',
    'Streptococcus sp. I-G2': 'Type II-C',
    'Salmonella enterica subsp. enterica serovar Heidelberg str. B182 chromosome'
    : 'Type I-E',
    'Bifidobacterium animalis subsp. lactis ATCC 27673 chromosome':
    'Type I-E', 'Bifidobacterium animalis subsp. lactis B420 chromosome':
    'Type I-U', 'Calothrix sp. PCC 6303 chromosome': 'Type I-D',
    'Propionibacterium acidipropionici ATCC 4875 chromosome': 'Type I-E',
    'Helicobacter cinaedi PAGU611': 'Type II-C',
    'Geitlerinema sp. PCC 7407 chromosome': 'Type I-U',
    'Synechococcus sp. PCC 7502 chromosome': 'Type III-B',
    'Bdellovibrio exovorus JSS': 'Type II-C',
    'Melioribacter roseus P3M chromosome': 'Type I-B',
    'Klebsiella pneumoniae subsp. pneumoniae 1084 chromosome': 'Type I-E',
    'Salmonella bongori N268-08': 'Type I-E',
    'Corynebacterium terpenotabidum Y-11': 'Type I-E',
    'Methanoculleus bourgensis MS2T complete genome': 'Type I-U',
    'Mycobacterium canettii CIPT 140060008 complete genome.': 'Type III-A',
    'Mycobacterium canettii CIPT 140070017 complete genome.': 'Type I-U',
    'Nocardiopsis alba ATCC BAA-2165 chromosome': 'Type I-E',
    'Enterococcus faecalis D32 chromosome': 'Type II-A',
    'Helicobacter cinaedi ATCC BAA-847 DNA': 'Type II-C',
    'Lactobacillus casei W56': 'Type II-A', 'Amycolatopsis mediterranei RB':
    'Type I-E', 'Neisseria meningitidis Z2491': 'Type II-C',
    'Riemerella anatipestifer RA-CH-1 chromosome': 'Type II-C',
    'Staphylococcus aureus 08BA02176 chromosome': 'Type III-A',
    'Leuconostoc gelidum JB7 chromosome': 'Type II-A',
    'Clostridium tetani 12124569 main chromosome': 'Type I-B',
    'Persephonella marina EX-H1': 'Type I-B', 'Geobacillus sp. GHH01':
    'Type III-B', 'Candidatus Methanomethylophilus alvus Mx1201':
    'Type V-A', 'Candidatus Nitrososphaera gargensis Ga9.2 chromosome':
    'Type I-B', 'Mannheimia haemolytica USDA-ARS-SAM-185': 'Type I-C',
    'Sorangium cellulosum So0157-2': 'Type I-U',
    'Bifidobacterium thermophilum RBL67': 'Type I-C',
    'Mannheimia haemolytica D153': 'Type I-C',
    'Corynebacterium urealyticum DSM 7111': 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921'
    : 'Type I-E', 'Bifidobacterium animalis subsp. lactis Bl12': 'Type I-U',
    'Treponema pedis str. T A4': 'Type II-C',
    'Methanomassiliicoccus sp. Mx1-Issoire': 'Type I-B',
    'Mycobacterium tuberculosis str. Haarlem/NITR202': 'Type III-A',
    'Mycobacterium tuberculosis str. Beijing/NITR203': 'Type III-A',
    'Mycobacterium tuberculosis EAI5': 'Type III-A',
    'Mycobacterium tuberculosis CAS/NITR204': 'Type III-A',
    'Mycobacterium tuberculosis EAI5/NITR206': 'Type III-A',
    'Mannheimia haemolytica D174': 'Type I-C',
    'Mannheimia haemolytica M42548': 'Type I-C',
    'Lactobacillus rhamnosus LOCK900': 'Type II-A',
    'complete chromosome Acholeplasma palmae.': 'Type II-C',
    'Salmonella enterica subsp. enterica serovar Bovismorbificans str. 3114 complete genome.'
    : 'Type I-E', 'Listeria monocytogenes EGD': 'Type II-A',
    'Escherichia coli LY180': 'Type I-E', 'Pseudomonas aeruginosa RP73':
    'Type I-E', 'Clostridium autoethanogenum DSM 10061': 'Type I-B',
    'Streptomyces rapamycinicus NRRL 5491 genome.': 'Type I-E',
    'Clostridium saccharobutylicum DSM 13864': 'Type I-B',
    'Mannheimia haemolytica USMARC_2286': 'Type I-C',
    'Methanobacterium sp. MB1 complete sequence.': 'Type I-B',
    'Desulfitobacterium hafniense Y51': 'Type I-B',
    'Thermosynechococcus sp. NK55 genome.': 'Type I-A',
    'Salmonella enterica subsp. enterica serovar Agona str. 24249':
    'Type I-E', 'Pseudomonas aeruginosa SCV20265': 'Type I-F',
    'Magnetococcus sp. MC-1': 'Type I-C',
    'Sphaerochaeta pleomorpha str. Grapes chromosome': 'Type I-C',
    'Listeria monocytogenes strain C1-387': 'Type I-B',
    'Listeria monocytogenes strain J2-031': 'Type II-A',
    'Desulfobacterium autotrophicum HRM2': 'Type I-B',
    'Desulfotalea psychrophila LSv54': 'Type I-U',
    'Alkalilimnicola ehrlichei MLHE-1': 'Type I-E',
    'Bifidobacterium longum DJO10A': 'Type II-C',
    'Streptococcus agalactiae 2603V/R': 'Type II-A',
    'Pseudomonas aeruginosa UCBPP-PA14': 'Type I-F',
    'Clostridium tetani E88': 'Type I-B',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344':
    'Type I-E', 'Salmonella bongori NCTC 12419': 'Type I-E',
    'Methanobrevibacter sp. AbM4': 'Type I-B',
    'Streptomyces avermitilis MA-4680 = NBRC 14893 DNA': 'Type I-E',
    'Acidovorax sp. JS42': 'Type I-F',
    'Acidobacterium capsulatum ATCC 51196': 'Type I-C',
    'Prevotella intermedia 17 chromosome chromosome II': 'Type II-C',
    'Prevotella intermedia 17 chromosome chromosome I': 'Type VI-B',
    'Thermococcus sp. AM4 chromosome': 'Type I-B',
    'Nocardia farcinica IFM 10152': 'Type I-E',
    'Verrucosispora maris AB-18-032 chromosome': 'Type I-E',
    'Methylobacillus flagellatus KT': 'Type I-C',
    'Geobacter metallireducens GS-15': 'Type I-C',
    'Anabaena cylindrica PCC 7122 plasmid pANACY.03': 'Type III-B',
    'Aeropyrum pernix K1': 'Type I-A', 'Bacteroides fragilis NCTC 9343':
    'Type II-C', 'Haloarcula marismortui ATCC 43049 plasmid pNG400':
    'Type I-B', 'Pyrococcus abyssi GE5': 'Type I-A',
    'Rhodobacter capsulatus SB1003 chromosome': 'Type I-C',
    'Thermoplasma volcanium GSS1': 'Type III-A',
    'Yersinia pseudotuberculosis IP 32953': 'Type I-F',
    'Nostoc sp. PCC 7524 plasmid pNOS7524.01': 'Type III-B',
    'Nostoc sp. PCC 7524 chromosome': 'Type I-D',
    'Clostridium perfringens SM101': 'Type I-B',
    'Chromohalobacter salexigens DSM 3043': 'Type I-E',
    'Photorhabdus asymbiotica': 'Type I-F',
    'Xanthomonas oryzae pv. oryzae KACC10331': 'Type I-C',
    'Legionella pneumophila str. Lens plasmid pLPL': 'Type I-F',
    'Legionella pneumophila str. Lens': 'Type I-F',
    'Legionella pneumophila str. Paris': 'Type II-B',
    'Photobacterium profundum SS9 plasmid pPBPR1': 'Type I-E',
    'Photobacterium profundum SS9 chromosome 2': 'Type I-F',
    'Frankia sp. EAN1pec': 'Type I-B', 'Corynebacterium jeikeium K411':
    'Type I-E', 'Haloferax volcanii DS2 plasmid pHV4': 'Type I-B',
    'Thermotoga neapolitana DSM 4359': 'Type I-B',
    'Parvularcula bermudensis HTCC2503 chromosome': 'Type I-C',
    'Rhodopseudomonas palustris BisB18': 'Type II-C',
    'Rhodopseudomonas palustris BisB5': 'Type II-C', 'Geobacter sp. FRC-32':
    'Type I-C', 'Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01':
    'Type I-B', 'Escherichia coli str. K-12 substr. W3110': 'Type I-E',
    'Shewanella putrefaciens CN-32': 'Type I-F',
    'Pelodictyon luteolum DSM 273': 'Type I-C',
    'Deinococcus geothermalis DSM 11300 plasmid 1': 'Type I-E',
    'Synechococcus sp. PCC 7002 plasmid pAQ6': 'Type III-B',
    'Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365': 'Type I-E',
    'Nitrobacter winogradskyi Nb-255': 'Type I-C', 'Frankia alni ACN14a':
    'Type I-E', 'Bifidobacterium breve UCC2003': 'Type I-C',
    'Escherichia coli E24377A': 'Type I-E', 'Escherichia coli HS':
    'Type I-E', 'Finegoldia magna ATCC 29328': 'Type II-A',
    'Mycobacterium tuberculosis F11': 'Type III-A',
    'Pelobacter carbinolicus DSM 2380': 'Type I-E',
    'Pelobacter propionicus DSM 2379': 'Type I-E',
    'Rhodoferax ferrireducens T118 plasmid1': 'Type IV',
    'Rhodoferax ferrireducens T118': 'Type I-C',
    'Methanosphaera stadtmanae DSM 3091': 'Type I-B',
    'Chlorobium chlorochromatii CaD3': 'Type I-C',
    'Corynebacterium glutamicum R': 'Type I-E',
    'Xanthomonas oryzae pv. oryzae MAFF 311018': 'Type I-C',
    'Vibrio cholerae O395 chromosome 1': 'Type I-E',
    'Bacillus coagulans 36D1 chromosome': 'Type I-B',
    'Streptococcus salivarius JIM8777': 'Type II-C',
    'Hahella chejuensis KCTC 2396': 'Type I-C',
    'Yersinia pseudotuberculosis IP 31758': 'Type I-F',
    'Acidothermus cellulolyticus 11B': 'Type II-C',
    'Shewanella sp. W3-18-1': 'Type I-F',
    'Lactobacillus delbrueckii subsp. bulgaricus 2038 chromosome':
    'Type II-A', 'Psychromonas ingrahamii 37': 'Type I-E',
    'Xanthomonas oryzae pv. oryzae PXO99A': 'Type I-C',
    'Campylobacter hominis ATCC BAA-381': 'Type I-B',
    'Lactobacillus salivarius UCC118': 'Type II-A',
    'Ramlibacter tataouinensis TTB310 chromosome': 'Type I-C',
    'Bifidobacterium adolescentis ATCC 15703': 'Type I-C',
    'Pseudomonas stutzeri A1501': 'Type I-C', 'Clostridium novyi NT':
    'Type I-B', 'Pyrobaculum islandicum DSM 4184': 'Type III-A',
    'Streptococcus sanguinis SK36': 'Type III-A',
    'Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842': 'Type I-E',
    'Granulibacter bethesdensis CGDNIH1': 'Type I-E',
    'Thermococcus barophilus MP chromosome': 'Type I-A',
    'Desulfovibrio vulgaris subsp. vulgaris DP4 plasmid pDVUL01':
    'Type I-C', 'Listeria monocytogenes Finland 1998 chromosome':
    'Type I-B', 'Listeria monocytogenes 10403S chromosome': 'Type II-A',
    'Mycobacterium tuberculosis str. Haarlem': 'Type III-A',
    'Leptothrix cholodnii SP-6': 'Type I-C',
    'Cyanothece sp. PCC 7425 plasmid pP742501': 'Type III-B',
    'Thioalkalivibrio sp. K90mix chromosome': 'Type I-F',
    'Delftia acidovorans SPH-1': 'Type I-F', 'Geobacter lovleyi SZ':
    'Type I-E', 'Shewanella baltica OS195': 'Type I-F',
    'Pseudomonas mendocina ymp': 'Type I-E', 'Enterobacter sp. 638':
    'Type I-F', 'Flavobacterium psychrophilum JIP02/86 complete genome':
    'Type II-C', 'Methanococcus maripaludis C5': 'Type I-B',
    'Parvibaculum lavamentivorans DS-1': 'Type II-C',
    'Shewanella baltica OS185': 'Type I-F', 'Petrotoga mobilis SJ95':
    'Type I-B', 'Lactobacillus helveticus DPC 4571': 'Type I-C',
    'Natrinema sp. J7-2 chromosome': 'Type I-B',
    'Xenorhabdus nematophila ATCC 19061': 'Type I-E',
    'Escherichia coli SE11': 'Type I-E', 'Methanocorpusculum labreanum Z':
    'Type I-C', 'Cronobacter turicensis z3032 complete genome': 'Type I-E',
    'Actinobacillus pleuropneumoniae L20': 'Type I-F',
    'Mycobacterium tuberculosis H37Ra': 'Type III-A',
    'Methanobrevibacter smithii ATCC 35061': 'Type I-B',
    'Salmonella enterica subsp. enterica serovar Newport str. SL254 chromosome'
    : 'Type I-E', 'Clostridium kluyveri DSM 555': 'Type I-B',
    'Actinobacillus pleuropneumoniae serovar 3 str. JL03': 'Type I-F',
    'Desulfatibacillum alkenivorans AK-01': 'Type I-E',
    'Escherichia coli SMS-3-5': 'Type I-E',
    'Bifidobacterium animalis subsp. lactis AD011': 'Type I-U',
    'Mycobacterium tuberculosis CCDC5079 chromosome': 'Type III-A',
    'Mycobacterium tuberculosis CCDC5180': 'Type III-A',
    'Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome':
    'Type I-E', 'Stackebrandtia nassauensis DSM 44728 chromosome':
    'Type I-C', 'Anaeromyxobacter sp. K': 'Type I-E',
    'Microcystis aeruginosa NIES-843': 'Type I-D',
    'Kitasatospora setae KM-6054': 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Heidelberg str. SL476':
    'Type I-E', 'Anaeromyxobacter dehalogenans 2CP-1': 'Type I-E',
    'Streptomyces griseus subsp. griseus NBRC 13350': 'Type I-E',
    'Erwinia tasmaniensis Et1/99': 'Type I-F',
    'Streptococcus gordonii str. Challis substr. CH1': 'Type II-C',
    'Thermobispora bispora DSM 43833 chromosome': 'Type I-E',
    'Fusobacterium nucleatum subsp. vincentii 3_1_36A2': 'Type II-A',
    'Thermomonospora curvata DSM 43183': 'Type I-E',
    'Mycobacterium tuberculosis KZN 4207 chromosome': 'Type III-A',
    'Mycobacterium tuberculosis KZN 1435': 'Type III-A',
    'Mycobacterium tuberculosis KZN 605 chromosome': 'Type III-A',
    'Nakamurella multipartita DSM 44233': 'Type I-E',
    'Catenulispora acidiphila DSM 44928': 'Type I-E',
    'Sphaerobacter thermophilus DSM 20745 chromosome 2': 'Type I-E',
    'Veillonella parvula DSM 2008': 'Type III-A',
    'Eggerthella lenta DSM 2243': 'Type I-C',
    'Acinetobacter baumannii AB0057': 'Type I-F',
    'Escherichia coli ATCC 8739': 'Type I-E',
    'Halomicrobium mukohataei DSM 12286': 'Type I-B',
    'Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1':
    'Type II-A', 'Candidatus Puniceispirillum marinum IMCC1322 chromosome':
    'Type II-C', 'Anoxybacillus flavithermus WK1': 'Type I-B',
    'Cellvibrio japonicus Ueda107': 'Type I-C',
    'Yersinia pseudotuberculosis YPIII': 'Type I-F',
    'Yersinia pseudotuberculosis PB1/+': 'Type I-F',
    'Spirosoma linguale DSM 74': 'Type I-B',
    'Corynebacterium urealyticum DSM 7109': 'Type I-E',
    'Acinetobacter baumannii AYE': 'Type I-F',
    'Caldisericum exile AZM16c01': 'Type I-B',
    'Escherichia coli str. K-12 substr. MG1655': 'Type I-E',
    'Lactobacillus buchneri NRRL B-30929 chromosome': 'Type II-A',
    'Chlorobaculum parvum NCIB 8327': 'Type III-A',
    'Streptobacillus moniliformis DSM 12112': 'Type II-C',
    'Halorhabdus utahensis DSM 12940': 'Type I-B',
    'Haloferax mediterranei ATCC 33500': 'Type I-B',
    'Thermococcus onnurineus NA1': 'Type III-D',
    'Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774':
    'Type I-E', 'Gardnerella vaginalis ATCC 14019 chromosome': 'Type I-E',
    'Acidimicrobium ferrooxidans DSM 10331': 'Type I-E',
    'Brachyspira murdochii DSM 12563 chromosome': 'Type I-B',
    'Pirellula staleyi DSM 6068': 'Type III-D', 'Escherichia coli DH1':
    'Type I-E', 'Actinobacillus pleuropneumoniae serovar 7 str. AP76':
    'Type I-F', 'Lactobacillus paracasei subsp. paracasei 8700:2':
    'Type II-A', 'Treponema azotonutricium ZAS-9 chromosome': 'Type III-B',
    'Hydrogenobaculum sp. HO': 'Type I-B', 'Hydrogenobaculum sp. SN':
    'Type I-B', 'Corynebacterium aurimucosum ATCC 700975': 'Type I-E',
    'Mobiluncus curtisii ATCC 43063 chromosome': 'Type I-E',
    'Erwinia amylovora': 'Type I-E',
    'Bifidobacterium animalis subsp. lactis BB-12 chromosome': 'Type I-U',
    'Listeria monocytogenes HCC23': 'Type I-B',
    'Halothiobacillus neapolitanus c2': 'Type I-C',
    'Bifidobacterium animalis subsp. lactis DSM 10140': 'Type I-U',
    'Acinetobacter baumannii AB307-0294': 'Type I-F',
    'Rhodobacter sphaeroides KD131 chromosome 1': 'Type I-C',
    'Listeria monocytogenes L99': 'Type I-B', 'Lactobacillus rhamnosus GG':
    'Type II-A',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. D23580':
    'Type I-E', 'Acidaminococcus intestini RyC-MR95 chromosome':
    'Type II-A', 'Allochromatium vinosum DSM 180 chromosome': 'Type I-E',
    'Ilyobacter polytropus DSM 2926 plasmid pILYOP01': 'Type II-C',
    'Aminobacterium colombiense DSM 12261 chromosome': 'Type I-A',
    'Desulfovibrio vulgaris RCH1 plasmid pDEVAL01': 'Type I-C',
    'Bifidobacterium animalis subsp. lactis V9 chromosome': 'Type I-U',
    'Desulfobulbus propionicus DSM 2032 chromosome': 'Type I-C',
    'Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome': 'Type I-E',
    'Bifidobacterium animalis subsp. lactis Bl-04': 'Type I-U',
    'Geobacillus sp. Y4.1MC1 chromosome': 'Type I-B',
    'Clostridium kluyveri NBRC 12016': 'Type I-B',
    'Ignisphaera aggregans DSM 17230 chromosome': 'Type I-A',
    'Escherichia coli IAI1': 'Type I-E',
    'Escherichia fergusonii ATCC 35469': 'Type I-E',
    'Roseburia hominis A2-183 chromosome': 'Type I-C',
    'Escherichia coli ED1a': 'Type I-F',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chromosome'
    : 'Type I-E', 'Desulfurivibrio alkaliphilus AHT2 chromosome':
    'Type I-F', 'Ferroglobus placidus DSM 10642 chromosome': 'Type I-A',
    'Cellulomonas fimi ATCC 484 chromosome': 'Type I-E',
    'Acidaminococcus fermentans DSM 20731': 'Type I-C',
    'Escherichia coli LF82': 'Type I-F', 'Thermococcus gammatolerans EJ3':
    'Type I-A', 'Tolumonas auensis DSM 9187': 'Type I-F',
    'Alicycliphilus denitrificans BC chromosome': 'Type II-C',
    'Alicycliphilus denitrificans K601 chromosome': 'Type II-C',
    'Neisseria meningitidis 8013': 'Type II-C',
    'Thermococcus sibiricus MM 739': 'Type I-B',
    'Hydrogenobacter thermophilus TK-6': 'Type I-B',
    'Zymomonas mobilis subsp. mobilis NCIB 11163': 'Type I-F',
    'Zymomonas mobilis subsp. mobilis NCIB 11163 plasmid pZA1002':
    'Type I-C', 'Sphingobium sp. SYK-6': 'Type I-C',
    'Dehalococcoides sp. GT chromosome': 'Type I-E',
    'Olsenella uli DSM 7084 chromosome': 'Type II-A',
    'Thermosphaera aggregans DSM 11486 chromosome': 'Type I-A',
    'Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011': 'Type I-E',
    'Nostoc punctiforme PCC 73102': 'Type I-D',
    'Deferribacter desulfuricans SSM1': 'Type I-B',
    'Deferribacter desulfuricans SSM1 megaplasmid pDF308': 'Type I-B',
    'Klebsiella variicola At-22 chromosome': 'Type I-E',
    'Desulfovibrio desulfuricans ND132 chromosome': 'Type I-C',
    'Arcanobacterium haemolyticum DSM 20595 chromosome': 'Type I-E',
    'Thermaerobacter marianensis DSM 12885 chromosome': 'Type I-B',
    'Clostridium difficile R20291': 'Type I-B',
    'Desulfosporosinus acidiphilus SJ4 chromosome': 'Type I-C',
    'Desulfobacula toluolica Tol2': 'Type I-B',
    'Rhodopseudomonas palustris DX-1 chromosome': 'Type I-C',
    'Mycobacterium tuberculosis str. Erdman = ATCC 35801 DNA': 'Type III-A',
    "Halanaerobium sp. 'sapolanicus' chromosome": 'Type I-B',
    'Gordonibacter pamelaeae 7-10-1-b draft genome.': 'Type II-A',
    'Corynebacterium resistens DSM 45100 chromosome': 'Type I-E',
    'Ethanoligenens harbinense YUAN-3 chromosome': 'Type I-C',
    'Geobacter sulfurreducens KN400 chromosome': 'Type I-E',
    'Spirochaeta thermophila DSM 6192 chromosome': 'Type I-C',
    'Acidilobus saccharovorans 345-15 chromosome': 'Type III-B',
    'Bacillus clausii KSM-K16': 'Type I-C',
    'Methanosalsum zhilinae DSM 4017 chromosome': 'Type I-E',
    'Sulfobacillus acidophilus DSM 10332 chromosome': 'Type I-B',
    'Rothia mucilaginosa DY-18': 'Type I-U',
    'Geobacillus sp. C56-T3 chromosome': 'Type I-B',
    'Archaeoglobus veneficus SNP6 chromosome': 'Type I-B',
    'Shewanella baltica OS678 chromosome': 'Type I-F',
    'Paludibacter propionicigenes WB4 chromosome': 'Type IV',
    'Thermoanaerobacter wiegelii Rt8.B1 chromosome': 'Type I-B',
    'Ruminococcus albus 7 chromosome': 'Type I-C',
    'Corynebacterium diphtheriae 31A chromosome': 'Type II-C',
    'Corynebacterium diphtheriae PW8 chromosome': 'Type I-E',
    'Corynebacterium diphtheriae HC03 chromosome': 'Type I-E',
    'Niastella koreensis GR20-10 chromosome': 'Type I-B',
    'Bifidobacterium animalis subsp. animalis ATCC 25527 chromosome':
    'Type I-E', 'Mycobacterium tuberculosis CTRI-2 chromosome':
    'Type III-A', 'Odoribacter splanchnicus DSM 20712 chromosome':
    'Type I-B', 'Lactobacillus salivarius CECT 5713 chromosome':
    'Type II-A', 'Amycolatopsis mediterranei S699 chromosome': 'Type I-E',
    'Erwinia amylovora ATCC 49946': 'Type I-E',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. T000240':
    'Type I-E', 'Delftia sp. Cs1-4 chromosome': 'Type I-F',
    'Bifidobacterium animalis subsp. lactis Bi-07 chromosome': 'Type I-U',
    'Thermus scotoductus SA-01 chromosome': 'Type I-E',
    'Taylorella equigenitalis ATCC 35865 chromosome': 'Type I-C',
    'Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome': 'Type I-F',
    'Deinococcus gobiensis I-0 plasmid P5': 'Type I-E',
    'Pseudogulbenkiania sp. NH8B': 'Type I-E',
    'Halobacteroides halobius DSM 5150': 'Type I-A',
    'Lactobacillus crispatus ST1': 'Type I-E',
    'Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1':
    'Type I-U', 'Methylophaga nitratireducenticrescens strain JAM1':
    'Type I-F', 'Methylophaga sp. JAM7 chromosome': 'Type I-F',
    'Cyanobacterium aponinum PCC 10605 chromosome': 'Type III-A',
    'Clostridium sp. BNL1100 chromosome': 'Type I-C',
    'Fluviicola taffensis DSM 16823 chromosome': 'Type II-C',
    'Halophilic archaeon DL31 chromosome': 'Type I-D',
    'Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02': 'Type III-B',
    'Streptococcus parasanguinis ATCC 15912 chromosome': 'Type I-C',
    'Aromatoleum aromaticum EbN1': 'Type I-C',
    'Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201': 'Type III-A',
    'Rothia dentocariosa ATCC 17931 chromosome': 'Type I-U',
    'Desulfurococcus mucosus DSM 2162 chromosome': 'Type I-A',
    'Thiocystis violascens DSM 198 chromosome': 'Type I-E',
    'Prevotella denticola F0289 chromosome': 'Type II-C',
    'Lactobacillus fermentum F-6': 'Type I-E',
    'Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome':
    'Type I-E', 'Lactobacillus helveticus H10 chromosome': 'Type I-C',
    'Calditerrivibrio nitroreducens DSM 19672 chromosome': 'Type III-A',
    'Desulfosporosinus orientis DSM 765 chromosome': 'Type I-C',
    'Natronobacterium gregoryi SP2 chromosome': 'Type I-B',
    'Thermus thermophilus JL-18 plasmid pTTJL1801': 'Type I-E',
    'Mycobacterium tuberculosis CDC1551': 'Type III-A',
    'Mycobacterium tuberculosis H37Rv': 'Type III-A', 'Thauera sp. MZ1T':
    'Type I-E', 'Ralstonia solanacearum CFBP2957': 'Type I-E',
    'Bacteroides fragilis 638R': 'Type II-C',
    'Streptococcus anginosus C1051': 'Type II-C',
    'Weeksella virosa DSM 16922 chromosome': 'Type II-C',
    'Belliella baltica DSM 15883 chromosome': 'Type II-C',
    'Bifidobacterium breve ACS-071-V-Sch8b chromosome': 'Type I-C',
    'Methanomethylovorans hollandica DSM 15978': 'Type III-C',
    'Treponema succinifaciens DSM 2489 chromosome': 'Type III-A',
    'Spirochaeta thermophila DSM 6578 chromosome': 'Type I-D',
    'Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1':
    'Type I-E', 'Listeria monocytogenes SLCC2540': 'Type II-A',
    'Porphyromonas asaccharolytica DSM 20707 chromosome': 'Type I-C',
    'Lactobacillus helveticus R0052 chromosome': 'Type I-C',
    'Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough megaplasmid':
    'Type I-C', 'Listeria monocytogenes SLCC5850': 'Type II-A',
    "Desulfovibrio vulgaris str. 'Miyazaki F'": 'Type I-C',
    'Bifidobacterium bifidum S17 chromosome': 'Type II-A',
    'Spirochaeta africana DSM 8902 chromosome': 'Type I-F',
    'Propionibacterium freudenreichii subsp. shermanii isolate PFREUDJS1 genome assembly'
    : 'Type I-U',
    'Methanoculleus sp. MAB1 isolate Methanoculleus sp MAB1 genome assembly':
    'Type I-U', 'Lactobacillus rhamnosus strain BPL5 genome assembly':
    'Type II-A', 'Neisseria weaveri strain NCTC13585 genome assembly':
    'Type I-C',
    'Xanthomonas translucens pv. translucens DSM 18974 isolate peng1 genome assembly'
    : 'Type I-C', 'Petrimonas mucosa isolate ING2-E5A genome assembly':
    'Type I-B', 'Clostridium chauvoei JF4335 genome assembly': 'Type I-B',
    'Treponema brennaborense DSM 12168 chromosome': 'Type I-C',
    'Prevotella dentalis DSM 3688 chromosome 2': 'Type I-C',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 chromosome'
    : 'Type I-E', 'Lactobacillus johnsonii DPC 6026 chromosome':
    'Type II-A', 'Selenomonas ruminantium subsp. lactilytica TAM6421':
    'Type I-F', 'Clostridium botulinum BKT015925 plasmid p1BKT015925':
    'Type I-B', 'Alcanivorax dieselolei B5 chromosome': 'Type I-F',
    'Clostridium saccharoperbutylacetonicum N1-4(HMT)': 'Type I-B',
    'Acetobacterium woodii DSM 1030 chromosome': 'Type I-B',
    'Neisseria meningitidis M01-240355 chromosome': 'Type II-C',
    'Pseudomonas aeruginosa M18 chromosome': 'Type I-F',
    'Bacillus coagulans 2-6 chromosome': 'Type I-B',
    'Neisseria meningitidis WUE 2594': 'Type II-C', 'Arcobacter sp. L':
    'Type I-B', 'Cronobacter sakazakii Sp291': 'Type I-E',
    'Streptococcus gallolyticus subsp. gallolyticus ATCC 43143':
    'Type II-A', 'Streptococcus pasteurianus ATCC 43144': 'Type II-C',
    'Rubrivivax gelatinosus IL144': 'Type I-E',
    'Staphylococcus pseudintermedius ED99 chromosome': 'Type II-C',
    'Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chromosome'
    : 'Type I-E', 'Xanthomonas campestris pv. raphani 756C chromosome':
    'Type I-F', 'Polymorphum gilvum SL003B-26A1 chromosome': 'Type I-E'}
goodChars = set('ATGC\n')
others = 0
cata = 0
for l in iFile:
    if l[0] == '>':
        label = l.split(' ', 1)[1].split(',', 1)[0]
        try:
            label = types[label]
            cata += 1
        except:
            others += 1
            label = 'Other'
    elif l[0] == '\n':
        if set(CRISPR) <= goodChars:
            if len(CRISPR) >= MIN_SIZE:
                labelFile.write(label + '\n')
                oFile.write(CRISPR + '\n')
        CRISPR = ''
    else:
        CRISPR = CRISPR + l.strip()
iFile.close()
oFile.close()
labelFile.close()
cata = cata - others
print(f'{cata} put in catagories.')
print(f'{others} Put in other catagory.')

'''
**OUT OF DATE**
Script to grab classification data as well as sequences from completeCRISPRs.txt

Author: Jay Turnsek
'''

MIN_SIZE = 4000  # Minimum size of a CRISPR before we take it
iFile = open('completeCRISPRs.txt', 'r')
oFile = open('CRISPR_' + str(MIN_SIZE) + '_catagorized.csv', 'w')
labelFile = open('CRISPR_labels_' + str(MIN_SIZE) + '.csv', 'w')  # File for the labels. No idea if this will be handy, but why not save it?

CRISPR = ''

# Types parsed by hand, this is out of date.
types = {
    "Fusobacterium nucleatum subsp. animalis 7_1": "Type I-B",
    "Aggregatibacter actinomycetemcomitans D7S-1": "Type I-C",
    "Fusobacterium nucleatum subsp. vincentii 3_1_27": "Type II-A",
    "Pseudomonas aeruginosa PACS2 chromosome": "Type I-F",
    "Streptococcus suis 05HAS68": "Type II-C",
    "Campylobacter jejuni subsp. jejuni CG8421": "Type II-C",
    "Verrucomicrobium spinosum DSM 4136": "Type III-B",
    "Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20": "Type I-E",
    "Mycobacterium tuberculosis W-148": "Type III-A",
    "Hydrogenobaculum sp. 3684": "Type I-B",
    "Hydrogenobaculum sp. SHO": "Type I-B",
    "Pseudomonas aeruginosa 19BR chromosome": "Type I-C",
    "Pseudomona aeruginosa 213BR chromosome": "Type I-C",
    "Halobiforma lacisalsi AJ5 plasmid pHLAJ5I": "Type I-B",
    "Halobacterium sp. DL1 plasmid": "Type I-B",
    "Halobacterium sp. DL1": "Type I-B",
    "Opitutaceae bacterium TAV5": "Type V-B",
    "Niabella soli DSM 19437": "Type II-C",
    "Sulfolobus islandicus M.16.2 chromosome": "Type I-A",
    "Sulfolobus islandicus M.16.40 chromosome": "Type I-A",
    "Sulfolobus islandicus M.16.41 chromosome": "Type I-A",
    "Sulfolobus islandicus M.16.47 chromosome": "Type I-A",
    "Serratia plymuthica PRI-2C": "Type I-F",
    "Streptomyces globisporus C-1027 plasmid SGLP1": "Type I-C",
    "Escherichia coli str. K-12 substr. MG1655 strain K-12": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. Levine 1": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. Levine 15": "Type I-E",
    "Pseudomonas aeruginosa SJTD-1": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM 21550": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM 22513": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM 21538": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM 22425": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM N18486": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM N1543": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. CVM 22462": "Type I-E",
    "Escherichia coli str. K-12 substr. MG1655 strain K-12 chromosome": "Type I-E",
    "Streptococcus pyogenes HKU QMH11M0907901 chromosome": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. 77-1427": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_0968": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Gallinarum str. 9184": "Type I-E",
    "Streptococcus suis YB51": "Type II-C",
    "Bacteroidales bacterium CF": "Type II-C",
    "Synechocystis sp. PCC 6714": "Type III-B",
    "Synechocystis sp. PCC 6714 plasmid pSYLA": "Type III-B",
    "Synechocystis sp. PCC 6714 plasmid pSYLB": "Type I-A",
    "Salmonella enterica subsp. enterica serovar Newport str. WA_14882": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Agona str. 460004 2-1": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg str. SARA35": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. SARA13": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Thompson str. ATCC 8391": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Tennessee str. TXSC_TXSC08-19": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Sloterdijk str. ATCC 15791": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 11511": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Minnesota str. ATCC 49284": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Muenster str. 0315 strain 315": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Inverness str. ATCC 10720": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Albany str. ATCC 51960": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. ATCC BAA-1592": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Bredeney str. CFSAN001080": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 strain SARB61": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Agona str. 392869-2": "Type I-E",
    "Escherichia coli str. K-12 substr. MC4100 complete genome": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002064": "Type I-E",
    "Pasteurella multocida subsp. multocida str. HB03": "Type II-C",
    "Erwinia amylovora LA637 chromosome VII": "Type I-E",
    "Barnesiella viscericola DSM 18177": "Type II-C",
    "Thermococcus sp. ES1": "Type I-B",
    "Chania multitudinisentens RB-25": "Type I-F",
    "Mannheimia varigena USDA-ARS-USMARC-1296": "Type I-C",
    "Mannheimia varigena USDA-ARS-USMARC-1388": "Type I-C",
    "Mannheimia varigena USDA-ARS-USMARC-1312": "Type I-C",
    "Bibersteinia trehalosi USDA-ARS-USMARC-190": "Type I-C",
    "Corynebacterium falsenii DSM 44353 strain BL 8171": "Type I-E",
    "Corynebacterium casei LMG S-19264": "Type I-E",
    "Listeria monocytogenes WSLC1001": "Type II-A",
    "Sulfurospirillum multivorans DSM 12446": "Type I-B",
    "Bifidobacterium breve NCFB 2258": "Type I-C",
    "Bifidobacterium breve S27": "Type I-C",
    "Mycobacterium tuberculosis HKBS1": "Type III-A",
    "Mycobacterium tuberculosis BT2": "Type III-A",
    "Mycobacterium tuberculosis BT1": "Type III-A",
    "Mycobacterium tuberculosis CCDC5180": "Type III-A",
    "Granulibacter bethesdensis CGDNIH4": "Type I-E",
    "Campylobacter coli RM4661": "Type II-C",
    "Thermococcus nautili strain 30-1": "Type I-B",
    "Hafnia alvei FB1": "Type I-F",
    "Paenibacillus polymyxa SQR-21": "Type I-C",
    "Trueperella pyogenes strain TP6375": "Type I-E",
    "Castellaniella defragrans 65Phen complete genome": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120005": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110361": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110360": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110357": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110356": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120002": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110354": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120008": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110221": "Type I-E",
    "Klebsiella michiganensis strain HKOPL1": "Type I-F",
    "Rubrobacter radiotolerans strain RSPS-4": "Type I-C",
    "Bifidobacterium animalis strain RH": "Type I-U",
    "Klebsiella pneumoniae subsp. pneumoniae KPNIH27": "Type I-E",
    "Pectobacterium atrosepticum strain JG10-08": "Type I-F",
    "Halomonas campaniensis strain LS21": "Type I-F",
    "Streptococcus equi subsp. zooepidemicus CY": "Type I-C",
    "Mycobacterium tuberculosis K": "Type III-A",
    "Salmonella bongori serovar 48:z41:-- str. RKS3044": "Type I-E",
    "Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299": "Type I-C",
    "Mucinivorans hirudinis complete genome": "Type II-C",
    "Escherichia coli KLY": "Type I-E",
    "Palaeococcus pacificus DY20341": "Type I-B",
    "Klebsiella pneumoniae subsp. pneumoniae PittNDM01": "Type I-E",
    "Thermodesulfobacterium commune DSM 2178": "Type I-A",
    "Riemerella anatipestifer CH3": "Type II-C",
    "Campylobacter iguaniorum strain 1485E": "Type I-B",
    "Flavobacterium psychrophilum strain CSF259-93": "Type II-C",
    "Actinobacillus suis ATCC 33415": "Type II-C",
    "Corynebacterium imitans strain DSM 44264": "Type I-U",
    "Moraxella catarrhalis strain 25240": "Type I-F",
    "Vibrio vulnificus strain 93U204": "Type I-F",
    "Corynebacterium ureicelerivorans strain IMMIB RIV-230": "Type I-E",
    "Yersinia pseudotuberculosis strain ATCC 6904": "Type I-F",
    "Pasteurella multocida strain ATCC 43137": "Type I-F",
    "Providencia stuartii strain ATCC 33672": "Type I-F",
    "Flavobacterium psychrophilum FPG101": "Type II-C",
    "Paenibacillus durus strain DSM 1735": "Type I-C",
    "Lactobacillus salivarius strain JCM1046": "Type III-A",
    "Paenibacillus borealis strain DSM 13188": "Type I-C",
    "Paenibacillus stellifer strain DSM 14472": "Type I-C",
    "Campylobacter fetus subsp. venerealis 97/608": "Type III-D",
    "Streptomyces glaucescens strain GLA.O plasmid pSglau1": "Type I-E",
    "Methanobacterium formicicum strain BRM9": "Type I-B",
    "Listeria ivanovii subsp. londoniensis strain WSLC 30151": "Type I-B",
    "Moraxella catarrhalis strain 25239": "Type I-F",
    "Flavobacterium psychrophilum strain 950106-1/1": "Type II-C",
    "Fervidobacterium islandicum strain AW-1": "Type I-B",
    "Corynebacterium ulcerans strain 210931": "Type I-E",
    "Corynebacterium ulcerans strain 210932": "Type I-E",
    "Corynebacterium ulcerans strain 05146": "Type I-E",
    "Methylomonas denitrificans strain FJG1": "Type I-E",
    "Geoglobus acetivorans strain SBH6": "Type I-B",
    "Clostridium baratii str. Sullivan": "Type I-B",
    "Escherichia coli ER2796": "Type I-E",
    "Pseudomonas parafulva strain CRS01-1": "Type I-F",
    "Parvimonas micra strain KCOM 1535": "Type II-A",
    "Bifidobacterium kashiwanohense PV20-2": "Type I-C",
    "Bifidobacterium pseudolongum PV8-2": "Type I-U",
    "Candidatus Methanoplasma termitum strain MpT1": "Type V-A",
    "Actinobacillus equuli subsp. equuli strain 19392": "Type I-F",
    "Clostridium pasteurianum DSM 525 = ATCC 6013": "Type I-B",
    "Halocynthiibacter arcticus strain PAMC 20958": "Type I-C",
    "Coriobacteriaceae bacterium 68-1-3": "Type I-C",
    "Streptomyces sp. 769": "Type I-B",
    "Streptomyces sp. 769 plasmid pSGZL": "Type I-E",
    "Dickeya zeae EC1": "Type I-E",
    "Trueperella pyogenes TP8": "Type I-E",
    "Staphylococcus hyicus strain ATCC 11249": "Type II-C",
    "Bifidobacterium animalis subsp. lactis KLDS2.0603": "Type I-U",
    "Campylobacter sp. RM16704": "Type II-C",
    "Campylobacter subantarcticus LMG 24374": "Type II-C",
    "Campylobacter lari NCTC 11845": "Type II-C",
    "Xanthomonas citri subsp. citri A306": "Type I-C",
    "Bifidobacterium animalis strain A6": "Type I-U",
    "Clostridium botulinum CDC_1436 plasmid pCBG": "Type I-B",
    "Azotobacter chroococcum NCIMB 8003": "Type I-E",
    "Pseudomonas balearica DSM 6083": "Type I-E",
    "Bifidobacterium animalis subsp. lactis strain BF052": "Type I-U",
    "Mannheimia haemolytica USDA-ARS-USMARC-184": "Type I-C",
    "Streptomyces albus strain DSM 41398": "Type I-E",
    "Mycobacterium tuberculosis H37RvSiena": "Type III-A",
    "Geoalkalibacter subterraneus strain Red1": "Type I-C",
    "Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1": "Type IV",
    "Haloarcula sp. CBA1115": "Type I-D",
    "Corynebacterium glutamicum strain B253": "Type I-E",
    "Methanothermobacter sp. CaT2 DNA": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. L-3553": "Type I-E",
    "Thiolapillus brandeum DNA": "Type I-E",
    "Sulfuritalea hydrogenivorans sk43H DNA": "Type II-C",
    "Thermotoga caldifontis AZM44c09 DNA": "Type I-D",
    "Thioploca ingrica DNA": "Type I-B",
    "Burkholderia sp. RPE67 DNA": "Type I-E",
    "Burkholderiales bacterium GJ-E10 DNA": "Type II-C",
    "Mycobacterium tuberculosis str. Kurono DNA": "Type III-A",
    "Chryseobacterium sp. StRB126 DNA": "Type II-C",
    "Raoultella ornithinolytica strain S12": "Type I-E",
    "Streptomyces vietnamensis strain GIM4.0001": "Type I-E",
    "Streptococcus anginosus strain SA1": "Type II-A",
    "Flavobacterium psychrophilum strain V4-24": "Type II-C",
    "Flavobacterium psychrophilum strain V4-33": "Type II-C",
    "Flavobacterium psychrophilum strain V3-5": "Type II-C",
    "Mycobacterium tuberculosis H37Rv": "Type III-A",
    "Streptococcus iniae strain YSFST01-82": "Type II-A",
    "Escherichia coli ECC-1470": "Type I-E",
    "Lactobacillus heilongjiangensis strain DSM 28069": "Type II-A",
    "Thermotoga sp. RQ7": "Type I-B",
    "Bacillus coagulans DSM 1 = ATCC 7050": "Type I-C",
    "Francisella tularensis subsp. novicida D9876": "Type II-B",
    "Corynebacterium singulare strain IBS B52218": "Type I-E",
    "Yersinia frederiksenii Y225": "Type I-F",
    "Yersinia pseudotuberculosis IP 32953": "Type I-F",
    "Yersinia pseudotuberculosis YPIII": "Type I-F",
    "Yersinia pseudotuberculosis strain EP2/+": "Type I-F",
    "Yersinia pseudotuberculosis strain 1": "Type I-F",
    "Yersinia pseudotuberculosis PB1/+": "Type I-F",
    "Yersinia kristensenii strain Y231": "Type I-F",
    "Yersinia pseudotuberculosis str. PA3606": "Type I-F",
    "Bacillus coagulans strain HM-08": "Type I-C",
    "Pseudomonas sp. MRSN12121": "Type I-F",
    "Alteromonas australica strain DE170": "Type I-F",
    "Propionibacterium freudenreichii subsp. freudenreichii strain DSM 20271": "Type I-U",
    "Salmonella enterica subsp. enterica serovar Anatum str. CDC 06-0532": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1903": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1899": "Type I-E",
    "Amycolatopsis orientalis strain B-37": "Type I-E",
    "Xanthomonas oryzae pv. oryzae PXO86": "Type I-C",
    "Paenibacillus sp. IHBB 10380": "Type I-B",
    "Streptomyces lydicus A02": "Type I-E",
    "Xenorhabdus nematophila AN6/1 genome assembly XNC2": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Infantis genome assembly SINFA": "Type I-E",
    "Aliivibrio wodanis genome assembly AWOD1": "Type I-F",
    "Moritella viscosa genome assembly MVIS1": "Type I-F",
    "Elizabethkingia miricola strain BM10": "Type II-C",
    "Lactobacillus helveticus strain KLDS1.8701": "Type I-E",
    "Paenibacillus beijingensis strain DSM 24997": "Type I-C",
    "Xanthomonas citri subsp. citri strain UI6": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1175": "Type I-E",
    "Mannheimia haemolytica strain 89010807N": "Type I-C",
    "Mannheimia haemolytica strain 89010807N lktA-": "Type I-C",
    "Pseudomonas chlororaphis strain PCL1606": "Type I-F",
    "Bifidobacterium angulatum strain GT102": "Type II-A",
    "Campylobacter fetus subsp. venerealis str. 84-112": "Type III-D",
    "Magnetospira sp. QH-2 chromosome": "Type I-C",
    "Xenorhabdus poinarii str. G6 chromosome": "Type I-E",
    "Xenorhabdus doucetiae str. FRM16 chromosome": "Type I-E",
    "Escherichia coli VR50": "Type I-E",
    "Janthinobacterium sp. B9-8": "Type I-E",
    "Methanococcoides methylutens MM1": "Type I-B",
    "Sneathia sp. Sn35": "Type V-A",
    "Pasteurella multocida subsp. multocida OH4807": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2011K-0870": "Type I-E",
    "Escherichia coli K-12 strain ER3454": "Type I-E",
    "Spirosoma radiotolerans strain DG5A": "Type I-B",
    "Escherichia coli K-12 strain ER3440": "Type I-E",
    "Escherichia coli K-12 strain ER3476": "Type I-E",
    "Escherichia coli K-12 strain ER3475": "Type I-E",
    "Corynebacterium camporealensis strain DSM 44610": "Type II-C",
    "Sulfurovum lithotrophicum strain ATCC BAA-797": "Type II-C",
    "Myxococcus fulvus 124B02": "Type I-C",
    "Streptomyces xiamenensis strain 318": "Type I-E",
    "Paenibacillus durus ATCC 35681": "Type I-C",
    "Serratia fonticola strain DSM 4576": "Type I-F",
    "Lactobacillus helveticus strain MB2-1": "Type I-B",
    "Geoglobus ahangari strain 234": "Type I-B",
    "Sedimenticola thiotaurini strain SIP-G1": "Type II-C",
    "Dehalococcoides sp. UCH007 DNA": "Type I-E",
    "Streptomyces sp. CNQ-509": "Type I-E",
    "Halanaeroarchaeum sulfurireducens strain HSR2": "Type I-B",
    "Corynebacterium mustelae strain DSM 45274": "Type I-E",
    "Corynebacterium uterequi strain DSM 45634": "Type I-E",
    "Chryseobacterium gallinarum strain DSM 27622": "Type II-C",
    "Bifidobacterium angulatum DSM 20098 = JCM 7096 DNA": "Type I-E",
    "Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 DNA": "Type I-E",
    "Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 DNA": "Type I-C",
    "Pragia fontium strain 24613": "Type I-F",
    "Xanthomonas citri pv. citri strain jx-6": "Type I-C",
    "Bacillus coagulans strain S-lac": "Type I-C",
    "Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA": "Type I-E",
    "Gardnerella vaginalis ATCC 14018 = JCM 11026 DNA": "Type I-E",
    "Parascardovia denticolens DSM 10105 = JCM 12538 DNA": "Type I-C",
    "Scardovia inopinata JCM 12537 DNA": "Type II-C",
    "Clostridium aceticum strain DSM 1496": "Type I-B",
    "Pseudomonas aeruginosa DSM 50071": "Type I-F",
    "Marinovum algicola DG 898": "Type II-C",
    "Bacillus smithii strain DSM 4216": "Type I-B",
    "Lactobacillus koreensis strain 26-25": "Type I-E",
    "Riemerella anatipestifer strain 153": "Type VI-B",
    "Nocardia farcinica genome assembly NCTC11134": "Type I-E",
    "Leptospirillum sp. Group II 'CF-1'": "Type I-E",
    "Anoxybacillus gonensis strain G2": "Type I-B",
    "Listeria monocytogenes strain LM850658": "Type I-B",
    "Staphylococcus schleiferi strain 1360-13": "Type II-C",
    "Staphylococcus schleiferi strain 5909-02": "Type II-C",
    "Staphylococcus schleiferi strain 2317-03": "Type II-C",
    "Olsenella sp. oral taxon 807 strain F0089": "Type I-C",
    "Luteipulveratus mongoliensis strain MN07-A0370 genome": "Type I-E",
    "Prevotella fusca JCM 17724 strain W1435 chromosome 2": "Type II-C",
    "Ottowia sp. oral taxon 894 strain W10237": "Type II-C",
    "Microcystis panniformis FACHB-1757": "Type I-D",
    "Chelatococcus sp. CO-6": "Type I-C",
    "Nitrospira moscoviensis strain NSP M-1": "Type I-A",
    "Leptotrichia sp. oral taxon 212 strain W10393": "Type I-B",
    "Cronobacter muytjensii ATCC 51329": "Type I-F",
    "Corynebacterium deserti GIMN1.010": "Type I-E",
    "Streptomyces sp. CFMR 7 strain CFMR-7": "Type I-E",
    "Streptomyces sp. CFMR 7 strain CFMR-7 plasmid": "Type I-E",
    "Capnocytophaga sp. oral taxon 323 strain F0383": "Type II-C",
    "Bifidobacterium longum subsp. infantis strain BT1": "Type I-C",
    "Bifidobacterium longum strain BG7": "Type II-C",
    "Fusobacterium nucleatum subsp. animalis strain KCOM 1279": "Type I-B",
    "Megasphaera elsdenii 14-14": "Type I-C",
    "Clostridium perfringens strain FORC_003": "Type II-C",
    "Confluentimicrobium sp. EMB200-NS6": "Type I-E",
    "Halanaeroarchaeum sulfurireducens strain M27-SA2": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Thompson strain RM1984": "Type I-E",
    "Lactobacillus helveticus strain CAUH18": "Type I-C",
    "Microbacterium sp. No. 7": "Type I-E",
    "Lactobacillus gallinarum strain HFD4": "Type I-C",
    "Azospirillum brasilense strain Sp7": "Type I-C",
    "Acinetobacter baumannii strain D36": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Weltevreden genome assembly 10259": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Weltevreden genome assembly 98_11262": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Weltevreden genome assembly C2346": "Type I-E",
    "Burkholderia plantarii strain ATCC 43733 chromosome 1": "Type I-F",
    "Streptococcus anginosus strain J4211": "Type II-C",
    "Fusobacterium nucleatum subsp. polymorphum strain ChDC F306": "Type III-A",
    "Aneurinibacillus sp. XH2": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374": "Type I-E",
    "Staphylococcus agnetis strain 908": "Type II-C",
    "Salmonella enterica subsp. enterica serovar Anatum strain GT-01": "Type I-E",
    "Marinobacter sp. LQ44": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_020": "Type I-E",
    "Fusobacterium hwasookii ChDC F300": "Type III-A",
    "Clostridium butyricum strain KNU-L09 chromosome 2": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Senftenberg genome assembly NCTC10384": "Type I-E",
    "Methanobacterium formicicum genome assembly isolate Mb9": "Type I-B",
    "Helicobacter typhlonius genome assembly htyphlonius_mit97-6810": "Type II-C",
    "Actinobacillus pleuropneumoniae serovar 8 genome assembly MIDG2331": "Type I-F",
    "Clostridium butyricum strain JKY6D1 chromosome 2": "Type I-B",
    "Paenibacillus naphthalenovorans strain 32O-Y": "Type I-C",
    "Rathayibacter toxicus strain WAC3373": "Type I-E",
    "Vibrio alginolyticus strain ATCC 33787 plasmid pMBL287": "Type I-F",
    "Streptococcus gallolyticus strain ICDDRB-NRC-S1": "Type II-C",
    "Methanobrevibacter millerae strain SM9": "Type III-A",
    "Eubacterium limosum strain SA11": "Type I-B",
    "Pseudoalteromonas rubra strain SCSIO 6842 chromosome 2": "Type I-C",
    "Clostridium autoethanogenum DSM 10061": "Type I-B",
    "Halobacterium sp. JI20-1 genome assembly Halobacterium hubeiense JI20-1": "Type I-B",
    "Pseudomonas aeruginosa strain W36662": "Type I-F",
    "Pseudomonas aeruginosa strain H27930": "Type I-F",
    "Pseudomonas aeruginosa strain M37351": "Type I-F",
    "Aerococcus urinaeequi strain USDA-ARS-USMARC-56713": "Type I-E",
    "Leclercia adecarboxylata strain USDA-ARS-USMARC-60222": "Type I-F",
    "Xanthomonas oryzae pv. oryzae strain PXO83": "Type I-C",
    "Corynebacterium glutamicum strain USDA-ARS-USMARC-56828": "Type I-U",
    "Klebsiella pneumoniae subsp. pneumoniae strain RJF999": "Type I-E",
    "Kurthia sp. 11kri321": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001387": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium isolate SO4698-09 genome assembly": "Type I-E",
    "Aerococcus sanguinicola strain CCUG43001": "Type I-E",
    "Aerococcus urinae strain CCUG36881": "Type I-E",
    "Aerococcus urinaehominis strain CCUG42038B": "Type I-E",
    "Turicibacter sp. H121": "Type II-C",
    "Mycobacterium tuberculosis strain F28": "Type III-A",
    "Mycobacterium tuberculosis strain 22115": "Type III-A",
    "Thermosulfidibacter takaii ABI70S6 DNA": "Type I-B",
    "Pseudomonas aeruginosa DNA": "Type I-F",
    "Sulfurospirillum cavolei DNA": "Type I-B",
    "Rothia mucilaginosa DNA": "Type I-U",
    "Listeria monocytogenes strain 2015TE19005-1355": "Type II-A",
    "Actinomyces oris strain T14V": "Type I-U",
    "Moraxella osloensis strain CCUG 350": "Type I-F",
    "Burkholderia sp. PAMC 26561 chromosome 1": "Type I-C",
    "Methanogenic archaeon ISO4-H5": "Type I-E",
    "Desulfovibrio sp. J2": "Type I-C",
    "Burkholderia sp. PAMC 28687 strain PAMC28687 chromosome 1": "Type I-E",
    "Martelella sp. AD-3": "Type I-C",
    "Pasteurella multocida subsp. multocida PMTB2.1": "Type I-F",
    "Steroidobacter denitrificans strain DSM 18526": "Type I-C",
    "Corynebacterium simulans strain PES1": "Type I-E",
    "Corynebacterium simulans strain Wattiau": "Type I-E",
    "Zhongshania aliphaticivorans strain SM2": "Type I-F",
    "Ralstonia solanacearum strain IBSBF1503": "Type I-E",
    "Pedobacter cryoconitis strain PAMC 27485": "Type II-C",
    "Legionella pneumophila subsp. pneumophila strain Toronto-20052": "Type I-C",
    "Pseudomonas aeruginosa strain F63912": "Type I-E",
    "Propionibacterium acidipropionici strain ATCC 55737": "Type I-U",
    "Pseudomonas aeruginosa strain N17-1": "Type I-C",
    "Dehalococcoides mccartyi strain 11a5": "Type I-E",
    "Klebsiella pneumoniae subsp. pneumoniae strain TGH8": "Type I-E",
    "Klebsiella pneumoniae subsp. pneumoniae strain TGH10": "Type I-E",
    "Pediococcus damnosus strain TMW 2.1536": "Type II-A",
    "Desulfuromonas sp. DDH964": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Weltevreden str. 1655": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1736": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1676": "Type I-E",
    "Defluviimonas alba strain cai42 plasmid cai42_plasmidC": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1728": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1766": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2010K-1587": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1781": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1880": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1896": "Type I-E",
    "Geobacter anodireducens strain SD-1": "Type I-E",
    "Salmonella enterica subsp. diarizonae strain 11-01853": "Type I-E",
    "Rhodovulum sulfidophilum DSM 1374": "Type I-E",
    "Anoxybacillus sp. B2M1": "Type I-B",
    "Anoxybacillus sp. B7M1": "Type I-B",
    "Acinetobacter baumannii strain 3207": "Type I-F",
    "Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260": "Type I-B",
    "Escherichia coli strain 2011C-3911": "Type I-E",
    "Klebsiella pneumoniae strain SKGH01": "Type I-E",
    "Clostridium butyricum strain TOA chromosome 2": "Type I-B",
    "Klebsiella pneumoniae strain AATZP": "Type I-E",
    "Streptomyces sp. RTd22": "Type I-B",
    "Marinobacterium sp. ST58-10": "Type III-B",
    "Streptomyces sp. SAT1": "Type I-E",
    "Pasteurella multocida subsp. multocida HB01": "Type I-F",
    "Klebsiella pneumoniae strain Kpn223": "Type I-E",
    "Lactobacillus backii strain TMW 1.1988": "Type II-C",
    "Lactobacillus backii strain TMW 1.1991": "Type II-C",
    "Lactobacillus backii strain TMW 1.1992": "Type II-C",
    "Escherichia coli strain 09-00049": "Type I-E",
    "Escherichia coli strain GB089": "Type I-E",
    "Streptococcus thermophilus strain CS8": "Type II-C",
    "Prosthecochloris sp. CIB 2401": "Type I-E",
    "Planococcus antarcticus DSM 14505": "Type II-C",
    "Bifidobacterium animalis subsp. animalis strain YL2": "Type I-E",
    "Lachnoclostridium sp. YL32": "Type I-C",
    "Akkermansia muciniphila strain YL44": "Type I-C",
    "Burkholderiales bacterium YL45": "Type II-B",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain SH12-007": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain SH12-003": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain 11-004736-1-7": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain CE-R2-11-0435": "Type I-E",
    "Aggregatibacter actinomycetemcomitans strain IDH781": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain A3EZ223": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg strain AMR588-04-00437": "Type I-E",
    "Synechococcus sp. PCC 7003 plasmid unnamed2": "Type III-B",
    "Synechococcus sp. PCC 7117 plasmid unnamed5": "Type I-D",
    "Neisseria meningitidis strain DE10444": "Type II-C",
    "Neisseria meningitidis strain M22819": "Type II-C",
    "Neisseria meningitidis strain M22809": "Type II-C",
    "Neisseria meningitidis strain M22811": "Type II-C",
    "Neisseria meningitidis strain M22804": "Type II-C",
    "Neisseria meningitidis strain M22828": "Type II-C",
    "Neisseria meningitidis strain M22822": "Type II-C",
    "Neisseria meningitidis strain M24705": "Type II-C",
    "Bordetella pseudohinzii strain HI4681": "Type II-C",
    "Lactobacillus helveticus strain D76": "Type I-B",
    "Lactobacillus lindneri strain TMW 1.1993": "Type II-A",
    "Salmonella enterica subsp. enterica serovar Typhimurium strain NC983": "Type I-E",
    "Xanthomonas fragariae isolate Fap29": "Type I-F",
    "Xanthomonas fragariae isolate Fap21": "Type I-F",
    "Klebsiella pneumoniae strain ED23": "Type I-E",
    "Cutibacterium avidum strain DPC 6544": "Type I-E",
    "Acidovorax sp. RAC01": "Type I-C",
    "Lactobacillus johnsonii strain BS15": "Type II-A",
    "Anaerolineaceae bacterium oral taxon 439 strain W11661": "Type I-C",
    "Selenomonas sp. oral taxon 920 strain W5150": "Type I-C",
    "Campylobacter coli strain 14983A": "Type II-C",
    "Campylobacter jejuni subsp. jejuni strain 14980A": "Type II-C",
    "Bifidobacterium longum strain 35624": "Type I-C",
    "Pseudomonas aeruginosa strain PA_D1": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D2": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D9": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D21": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D22": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D25": "Type I-F",
    "Pasteurella multocida strain Pm-3": "Type I-F",
    "Pseudomonas aeruginosa strain PA_D5": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931": "Type I-F",
    "Enterobacter hormaechei subsp. oharae strain DSM 16687": "Type I-F",
    "Lactobacillus fermentum strain NCC2970": "Type II-A",
    "Klebsiella pneumoniae subsp. pneumoniae strain TGH13": "Type I-E",
    "Xanthomonas oryzae pv. oryzae strain PXO71": "Type I-C",
    "Xanthomonas oryzae pv. oryzae strain PXO145": "Type I-C",
    "Xanthomonas oryzae pv. oryzae strain PXO211": "Type I-C",
    "Xanthomonas oryzae pv. oryzae strain PXO236": "Type I-C",
    "Xanthomonas oryzae pv. oryzae strain PXO563": "Type I-C",
    "Xanthomonas oryzae pv. oryzae strain PXO602": "Type I-C",
    "Pseudoalteromonas luteoviolacea strain S4054249 chromosome 2": "Type I-F",
    "Pseudoalteromonas luteoviolacea strain S4054 chromosome 2": "Type I-F",
    "Pseudoalteromonas luteoviolacea strain S40542 chromosome 2": "Type I-F",
    "Geosporobacter ferrireducens strain IRF9": "Type I-B",
    "Streptomyces rubrolavendulae strain MJM4426": "Type I-E",
    "Neisseria meningitidis strain 331401": "Type II-C",
    "Escherichia coli strain FORC_031": "Type I-E",
    "Legionella pneumophila strain Philadelphia_1_ATCC": "Type II-B",
    "Legionella pneumophila strain Philadelphia_4": "Type II-B",
    "Legionella pneumophila strain Philadelphia_2": "Type II-B",
    "Legionella pneumophila subsp. pneumophila strain FFI102": "Type I-F",
    "Legionella pneumophila subsp. pneumophila strain FFI103": "Type I-F",
    "Legionella pneumophila subsp. pneumophila strain FFI104": "Type I-F",
    "Legionella pneumophila subsp. pneumophila strain FFI105": "Type I-F",
    "Pediococcus acidilactici strain ZPA017": "Type II-A",
    "Pseudomonas aeruginosa strain PA1088": "Type I-C",
    "Pseudomonas aeruginosa strain PA8281": "Type I-C",
    "Flavobacterium sp. LPB0076": "Type II-C",
    "Psychrobacter sp. AntiMn-1": "Type I-C",
    "Clostridium formicaceticum strain ATCC 27076": "Type I-B",
    "Chromobacterium vaccinii strain 21-1": "Type I-E",
    "Klebsiella pneumoniae strain KP5": "Type I-E",
    "Propionibacterium acidipropionici strain F3E8": "Type I-U",
    "Clostridium pasteurianum DSM 525 = ATCC 6013": "Type I-B",
    "Clostridium pasteurianum strain M150B": "Type I-B",
    "Bacillus coagulans strain BC-HY1": "Type I-B",
    "Klebsiella pneumoniae strain CAV1016": "Type I-E",
    "Pseudomonas aeruginosa strain PA7790": "Type I-C",
    "Paenibacillus polymyxa strain YC0573": "Type I-C",
    "Vibrio parahaemolyticus strain FORC_022 chromosome 2": "Type I-F",
    "Lactobacillus plantarum strain MF1298": "Type II-A",
    "Klebsiella pneumoniae strain Kp_Goe_822579": "Type I-E",
    "Alteromonas mediterranea strain CP48": "Type I-F",
    "Alteromonas mediterranea strain CP49": "Type I-F",
    "Delftia sp. HK171": "Type I-F",
    "Clostridium butyricum strain CDC_51208 plasmid pNPD4_2": "Type I-B",
    "Chelatococcus daeguensis strain TAD1": "Type I-C",
    "Pelobacter acetylenicus strain DSM 3246": "Type I-E",
    "Lactobacillus delbrueckii subsp. delbrueckii strain KCTC 13731": "Type II-A",
    "Lactobacillus delbrueckii subsp. lactis strain KCTC 3035": "Type I-C",
    "Clostridium botulinum strain CDC_1632": "Type I-B",
    "Granulibacter bethesdensis strain NIH1.4": "Type I-E",
    "Granulibacter bethesdensis strain NIH5.1": "Type I-E",
    "Granulibacter bethesdensis strain NIH6.1": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport strain CFSAN003890": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Newport strain CFSAN003387": "Type I-E",
    "Marinilactibacillus sp. 15R": "Type I-C",
    "Mycobacterium tuberculosis strain I0004241-1": "Type III-A",
    "Mycobacterium tuberculosis strain M0018684-2": "Type III-A",
    "Mycobacterium tuberculosis strain I0004000-1": "Type III-A",
    "Acinetobacter baumannii strain AF-401": "Type I-F",
    "Escherichia coli strain C1": "Type I-E",
    "Escherichia coli strain D7": "Type I-E",
    "Escherichia coli strain H5": "Type I-E",
    "Escherichia coli strain C2": "Type I-E",
    "Escherichia coli strain D1": "Type I-E",
    "Escherichia coli strain D8": "Type I-E",
    "Escherichia coli strain D10": "Type I-E",
    "Escherichia coli strain H3": "Type I-E",
    "Escherichia coli strain S40": "Type I-E",
    "Escherichia coli strain M1": "Type I-E",
    "Escherichia coli strain M3": "Type I-E",
    "Escherichia coli strain M8": "Type I-E",
    "Paenibacillus xylanexedens strain PAMC 22703": "Type I-C",
    "Lactobacillus delbrueckii subsp. indicus strain JCM 15610": "Type I-E",
    "Klebsiella pneumoniae strain Kp_Goe_149473": "Type I-E",
    "Klebsiella pneumoniae strain Kp_Goe_827024": "Type I-E",
    "Klebsiella pneumoniae strain Kp_Goe_827026": "Type I-E",
    "Klebsiella pneumoniae strain Kp_Goe_152021": "Type I-E",
    "Klebsiella pneumoniae strain KP_Goe_828304": "Type I-E",
    "Klebsiella pneumoniae strain Kp_Goe_149832": "Type I-E",
    "Maribacter sp. T28": "Type II-C",
    "Xanthomonas citri pv. citri strain LL074-4": "Type I-C",
    "Xanthomonas citri pv. citri strain LH276": "Type I-C",
    "Xanthomonas citri pv. citri strain LJ207-7": "Type I-C",
    "Pediococcus acidilactici strain BCC1": "Type II-A",
    "Mycobacterium tuberculosis strain DK9897": "Type III-A",
    "Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Infantis strain N55391": "Type I-E",
    "Streptomyces sp. Tue6075": "Type I-E",
    "Klebsiella pneumoniae strain ATCC 35657": "Type I-E",
    "Lactobacillus jensenii strain SNUV360": "Type II-A",
    "Lactobacillus amylophilus DSM 20533 = JCM 1125": "Type I-E",
    "Campylobacter coli strain YH502": "Type II-C",
    "Escherichia coli strain 2016C-3936C1": "Type I-E",
    "Mycobacterium tuberculosis H37Ra": "Type III-A",
    "Xanthomonas citri pv. citri strain LM199 chromosome": "Type I-C",
    "Xanthomonas citri pv. citri strain LM180 chromosome": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Cerro strain 87": "Type I-E",
    "Corynebacterium flavescens strain OJ8": "Type I-U",
    "Corynebacterium frankenforstense DSM 45800 strain ST18": "Type I-E",
    "Corynebacterium phocae strain M408/89/1": "Type I-E",
    "Lactobacillus fermentum strain SNUV175": "Type I-E",
    "Acinetobacter junii strain 65": "Type I-F",
    "Pseudomonas alcaliphila JAB1": "Type I-F",
    "Klebsiella pneumoniae strain CN1": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN004175": "Type I-E",
    "Lactobacillus delbrueckii subsp. bulgaricus strain DSM 20080": "Type II-A",
    "Prevotella intermedia strain strain 17 chromosome I": "Type IV-B",
    "Prevotella intermedia strain strain 17 chromosome II": "Type II-C",
    "Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome I": "Type II-C*",
    "Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome II": "Type IV-B",
    "Klebsiella pneumoniae strain 825795-1": "Type I-E",
    "Paludisphaera borealis strain PX4": "Type I-C",
    "Mycobacterium tuberculosis strain 6548 chromosome": "Type III-A",
    "Salmonella enterica subsp. enterica serovar Senftenberg strain 775W": "Type I-E",
    "Halomonas sp. 1513": "Type I-E",
    "Winogradskyella sp. J14-2": "Type II-C",
    "Seonamhaeicola sp. S2-3": "Type II-C",
    "Kosakonia cowanii strain 888-76": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Apapa str. SA20060561": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Bergen str. ST350": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Wandsworth str. SA20092095": "Type I-E",
    "Jeotgalibaca sp. PTS2502": "Type II-C",
    "Pelagibaca abyssi strain JLT2014": "Type I-E",
    "Acidihalobacter ferrooxidans strain V8 genome": "Type I-U",
    "Streptococcus oralis strain S.MIT/ORALIS-351": "Type III-A",
    "Streptomyces autolyticus strain CGMCC0516": "Type I-E",
    "Lactobacillus rhamnosus strain BFE5264": "Type II-A",
    "Spirosoma montaniterrae strain DY10": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Typhimurium strain 81741": "Type I-E",
    "Tessaracoccus sp. NSG39": "Type I-E",
    "Mycobacterium tuberculosis TRS9 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB35 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB36 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB37 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB38 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB40 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB41 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB44 genome": "Type III-A",
    "Mycobacterium tuberculosis 1821ADB45 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS1 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS10 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS11 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS12 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS13 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS14 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS15 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS16 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS17 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS18 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS19 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS20 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS21 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS22 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS23 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS24 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS25 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS26 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS27 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS28 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS29 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS2 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS3 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS4 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS5 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS6 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS7 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS8 genome": "Type III-A",
    "Mycobacterium tuberculosis TRS9 genome": "Type III-A",
    "Tessaracoccus flavescens strain SST-39T": "Type I-E",
    "Listeria monocytogenes strain 10-092876-0168": "Type II-A",
    "Listeria monocytogenes strain 10-092876-1763 LM10": "Type I-B",
    "Clostridium saccharobutylicum strain NCP 200": "Type I-B",
    "Clostridium saccharoperbutylacetonicum strain N1-504": "Type I-B",
    "Clostridium saccharobutylicum strain BAS/B3/SW/136": "Type I-B",
    "Clostridium saccharobutylicum strain NCP 258": "Type I-B",
    "Clostridium saccharobutylicum strain NCP 195": "Type I-B",
    "Veillonella parvula strain UTDB1-3": "Type III-D",
    "Streptomyces pactum strain ACT12": "Type I-E",
    "Bartonella apis strain BBC0178": "Type II-C",
    "Bartonella apis strain BBC0244": "Type II-C",
    "Cellvibrio sp. PSBB023": "Type I-E",
    "Clostridioides difficile strain BR81": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Typhimurium strain RM10607": "Type I-E",
    "Halomonas sp. 'Soap Lake #7'": "Type I-C",
    "Escherichia coli strain Ecol_224": "Type I-E",
    "Escherichia coli strain Ecol_545": "Type I-E",
    "Escherichia coli strain Ecol_881": "Type I-E",
    "Clostridium perfringens strain CP15 genome": "Type I-B",
    "Dehalococcoides mccartyi strain KBDCA3": "Type I-C",
    "Elizabethkingia meningoseptica strain G4076": "Type II-C",
    "Dehalococcoides mccartyi strain KBVC1": "Type I-E",
    "Streptococcus agalactiae strain Sag158,": "Type II-A",
    "Listeria monocytogenes strain ICDC-LM188": "Type II-A",
    "Escherichia coli strain AR_0118": "Type I-E",
    "Pseudomonas sp. S-6-2": "Type I-E",
    "Comamonas kerstersii strain 8943": "Type I-E",
    "Spirosoma aerolatum strain KACC 17939": "Type I-B",
    "Streptococcus suis ST3 chromosome": "Type II-C",
    "Sulfolobus acidocaldarius N8": "Type I-D",
    "Hyphomicrobium nitrativorans NL23": "Type I-C",
    "Listeria monocytogenes M7 chromosome": "Type I-B",
    "Ralstonia solanacearum Po82 chromosome": "Type I-E",
    "Microlunatus phosphovorus NM-1": "Type III-D",
    "Halorhabdus tiamatea SARL4B complete genome.": "Type I-B",
    "Bifidobacterium longum subsp. longum KACC 91563 chromosome": "Type II-C",
    "Candidatus Arthromitus sp. SFB-rat-Yit": "Type I-C",
    "Clostridium sp. SY8519": "Type I-E",
    "Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome": "Type I-U",
    "Pseudoxanthomonas spadix BD-a59": "Type I-C",
    "Streptococcus salivarius 57.I chromosome": "Type I-E",
    "Mycobacterium canettii CIPT 140010059": "Type III-A",
    "Streptococcus salivarius CCHSS3": "Type I-E",
    "Streptococcus equi subsp. zooepidemicus ATCC 35246 chromosome": "Type I-C",
    "Methanococcus maripaludis XI chromosome": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Thompson str. RM6836": "Type I-E",
    "Pasteurella multocida 36950 chromosome": "Type I-F",
    "Bifidobacterium animalis subsp. lactis BLC1": "Type I-U",
    "Melissococcus plutonius DAT561 chromosome 1": "Type I-C",
    "Mycobacterium tuberculosis RGTB327 chromosome": "Type III-A",
    "Mycobacterium tuberculosis RGTB423 chromosome": "Type III-A",
    "Burkholderia sp. YI23 chromosome 2": "Type I-E",
    "Tistrella mobilis KA081020-065 plasmid pTM1": "Type III-D",
    "Methanosaeta harundinacea 6Ac chromosome": "Type III-B",
    "Gordonia polyisoprenivorans VH2 chromosome": "Type I-U",
    "Streptococcus macedonicus ACA-DC 198": "Type II-C",
    "Salmonella enterica subsp. enterica serovar Heidelberg str. 41578": "Type I-E",
    "Pasteurella multocida subsp. multocida str. HN06 chromosome": "Type I-F",
    "Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1": "Type I-E",
    "Escherichia coli O104:H4 str. 2009EL-2071 chromosome": "Type I-E",
    "Cronobacter sakazakii ES15 chromosome": "Type I-E",
    "Mycobacterium tuberculosis 7199-99 complete genome.": "Type III-A",
    "Phycisphaera mikurensis NBRC 102666": "Type I-C",
    "Bifidobacterium asteroides PRL2011 chromosome": "Type I-E",
    "Streptococcus sp. I-G2": "Type II-C",
    "Salmonella enterica subsp. enterica serovar Heidelberg str. B182 chromosome": "Type I-E",
    "Bifidobacterium animalis subsp. lactis ATCC 27673 chromosome": "Type I-E",
    "Bifidobacterium animalis subsp. lactis B420 chromosome": "Type I-U",
    "Calothrix sp. PCC 6303 chromosome": "Type I-D",
    "Propionibacterium acidipropionici ATCC 4875 chromosome": "Type I-E",
    "Helicobacter cinaedi PAGU611": "Type II-C",
    "Geitlerinema sp. PCC 7407 chromosome": "Type I-U",
    "Synechococcus sp. PCC 7502 chromosome": "Type III-B",
    "Bdellovibrio exovorus JSS": "Type II-C",
    "Melioribacter roseus P3M chromosome": "Type I-B",
    "Klebsiella pneumoniae subsp. pneumoniae 1084 chromosome": "Type I-E",
    "Salmonella bongori N268-08": "Type I-E",
    "Corynebacterium terpenotabidum Y-11": "Type I-E",
    "Methanoculleus bourgensis MS2T complete genome": "Type I-U",
    "Mycobacterium canettii CIPT 140060008 complete genome.": "Type III-A",
    "Mycobacterium canettii CIPT 140070017 complete genome.": "Type I-U",
    "Nocardiopsis alba ATCC BAA-2165 chromosome": "Type I-E",
    "Enterococcus faecalis D32 chromosome": "Type II-A",
    "Helicobacter cinaedi ATCC BAA-847 DNA": "Type II-C",
    "Lactobacillus casei W56": "Type II-A",
    "Amycolatopsis mediterranei RB": "Type I-E",
    "Neisseria meningitidis Z2491": "Type II-C",
    "Riemerella anatipestifer RA-CH-1 chromosome": "Type II-C",
    "Staphylococcus aureus 08BA02176 chromosome": "Type III-A",
    "Leuconostoc gelidum JB7 chromosome": "Type II-A",
    "Clostridium tetani 12124569 main chromosome": "Type I-B",
    "Persephonella marina EX-H1": "Type I-B",
    "Geobacillus sp. GHH01": "Type III-B",
    "Candidatus Methanomethylophilus alvus Mx1201": "Type V-A",
    "Candidatus Nitrososphaera gargensis Ga9.2 chromosome": "Type I-B",
    "Mannheimia haemolytica USDA-ARS-SAM-185": "Type I-C",
    "Sorangium cellulosum So0157-2": "Type I-U",
    "Bifidobacterium thermophilum RBL67": "Type I-C",
    "Mannheimia haemolytica D153": "Type I-C",
    "Corynebacterium urealyticum DSM 7111": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921": "Type I-E",
    "Bifidobacterium animalis subsp. lactis Bl12": "Type I-U",
    "Treponema pedis str. T A4": "Type II-C",
    "Methanomassiliicoccus sp. Mx1-Issoire": "Type I-B",
    "Mycobacterium tuberculosis str. Haarlem/NITR202": "Type III-A",
    "Mycobacterium tuberculosis str. Beijing/NITR203": "Type III-A",
    "Mycobacterium tuberculosis EAI5": "Type III-A",
    "Mycobacterium tuberculosis CAS/NITR204": "Type III-A",
    "Mycobacterium tuberculosis EAI5/NITR206": "Type III-A",
    "Mannheimia haemolytica D174": "Type I-C",
    "Mannheimia haemolytica M42548": "Type I-C",
    "Lactobacillus rhamnosus LOCK900": "Type II-A",
    "complete chromosome Acholeplasma palmae.": "Type II-C",
    "Salmonella enterica subsp. enterica serovar Bovismorbificans str. 3114 complete genome.": "Type I-E",
    "Listeria monocytogenes EGD": "Type II-A",
    "Escherichia coli LY180": "Type I-E",
    "Pseudomonas aeruginosa RP73": "Type I-E",
    "Clostridium autoethanogenum DSM 10061": "Type I-B",
    "Streptomyces rapamycinicus NRRL 5491 genome.": "Type I-E",
    "Clostridium saccharobutylicum DSM 13864": "Type I-B",
    "Mannheimia haemolytica USMARC_2286": "Type I-C",
    "Methanobacterium sp. MB1 complete sequence.": "Type I-B",
    "Desulfitobacterium hafniense Y51": "Type I-B",
    "Thermosynechococcus sp. NK55 genome.": "Type I-A",
    "Salmonella enterica subsp. enterica serovar Agona str. 24249": "Type I-E",
    "Pseudomonas aeruginosa SCV20265": "Type I-F",
    "Magnetococcus sp. MC-1": "Type I-C",
    "Sphaerochaeta pleomorpha str. Grapes chromosome": "Type I-C",
    "Listeria monocytogenes strain C1-387": "Type I-B",
    "Listeria monocytogenes strain J2-031": "Type II-A",
    "Desulfobacterium autotrophicum HRM2": "Type I-B",
    "Desulfotalea psychrophila LSv54": "Type I-U",
    "Alkalilimnicola ehrlichei MLHE-1": "Type I-E",
    "Bifidobacterium longum DJO10A": "Type II-C",
    "Streptococcus agalactiae 2603V/R": "Type II-A",
    "Pseudomonas aeruginosa UCBPP-PA14": "Type I-F",
    "Clostridium tetani E88": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344": "Type I-E",
    "Salmonella bongori NCTC 12419": "Type I-E",
    "Methanobrevibacter sp. AbM4": "Type I-B",
    "Streptomyces avermitilis MA-4680 = NBRC 14893 DNA": "Type I-E",
    "Acidovorax sp. JS42": "Type I-F",
    "Acidobacterium capsulatum ATCC 51196": "Type I-C",
    "Prevotella intermedia 17 chromosome chromosome II": "Type II-C",
    "Prevotella intermedia 17 chromosome chromosome I": "Type VI-B",
    "Thermococcus sp. AM4 chromosome": "Type I-B",
    "Nocardia farcinica IFM 10152": "Type I-E",
    "Verrucosispora maris AB-18-032 chromosome": "Type I-E",
    "Methylobacillus flagellatus KT": "Type I-C",
    "Geobacter metallireducens GS-15": "Type I-C",
    "Anabaena cylindrica PCC 7122 plasmid pANACY.03": "Type III-B",
    "Aeropyrum pernix K1": "Type I-A",
    "Bacteroides fragilis NCTC 9343": "Type II-C",
    "Haloarcula marismortui ATCC 43049 plasmid pNG400": "Type I-B",
    "Pyrococcus abyssi GE5": "Type I-A",
    "Rhodobacter capsulatus SB1003 chromosome": "Type I-C",
    "Thermoplasma volcanium GSS1": "Type III-A",
    "Yersinia pseudotuberculosis IP 32953": "Type I-F",
    "Nostoc sp. PCC 7524 plasmid pNOS7524.01": "Type III-B",
    "Nostoc sp. PCC 7524 chromosome": "Type I-D",
    "Clostridium perfringens SM101": "Type I-B",
    "Chromohalobacter salexigens DSM 3043": "Type I-E",
    "Photorhabdus asymbiotica": "Type I-F",
    "Xanthomonas oryzae pv. oryzae KACC10331": "Type I-C",
    "Legionella pneumophila str. Lens plasmid pLPL": "Type I-F",
    "Legionella pneumophila str. Lens": "Type I-F",
    "Legionella pneumophila str. Paris": "Type II-B",
    "Photobacterium profundum SS9 plasmid pPBPR1": "Type I-E",
    "Photobacterium profundum SS9 chromosome 2": "Type I-F",
    "Frankia sp. EAN1pec": "Type I-B",
    "Corynebacterium jeikeium K411": "Type I-E",
    "Haloferax volcanii DS2 plasmid pHV4": "Type I-B",
    "Thermotoga neapolitana DSM 4359": "Type I-B",
    "Parvularcula bermudensis HTCC2503 chromosome": "Type I-C",
    "Rhodopseudomonas palustris BisB18": "Type II-C",
    "Rhodopseudomonas palustris BisB5": "Type II-C",
    "Geobacter sp. FRC-32": "Type I-C",
    "Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01": "Type I-B",
    "Escherichia coli str. K-12 substr. W3110": "Type I-E",
    "Shewanella putrefaciens CN-32": "Type I-F",
    "Pelodictyon luteolum DSM 273": "Type I-C",
    "Deinococcus geothermalis DSM 11300 plasmid 1": "Type I-E",
    "Synechococcus sp. PCC 7002 plasmid pAQ6": "Type III-B",
    "Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365": "Type I-E",
    "Nitrobacter winogradskyi Nb-255": "Type I-C",
    "Frankia alni ACN14a": "Type I-E",
    "Bifidobacterium breve UCC2003": "Type I-C",
    "Escherichia coli E24377A": "Type I-E",
    "Escherichia coli HS": "Type I-E",
    "Finegoldia magna ATCC 29328": "Type II-A",
    "Mycobacterium tuberculosis F11": "Type III-A",
    "Pelobacter carbinolicus DSM 2380": "Type I-E",
    "Pelobacter propionicus DSM 2379": "Type I-E",
    "Rhodoferax ferrireducens T118 plasmid1": "Type IV",
    "Rhodoferax ferrireducens T118": "Type I-C",
    "Methanosphaera stadtmanae DSM 3091": "Type I-B",
    "Chlorobium chlorochromatii CaD3": "Type I-C",
    "Corynebacterium glutamicum R": "Type I-E",
    "Xanthomonas oryzae pv. oryzae MAFF 311018": "Type I-C",
    "Vibrio cholerae O395 chromosome 1": "Type I-E",
    "Bacillus coagulans 36D1 chromosome": "Type I-B",
    "Streptococcus salivarius JIM8777": "Type II-C",
    "Hahella chejuensis KCTC 2396": "Type I-C",
    "Yersinia pseudotuberculosis IP 31758": "Type I-F",
    "Acidothermus cellulolyticus 11B": "Type II-C",
    "Shewanella sp. W3-18-1": "Type I-F",
    "Lactobacillus delbrueckii subsp. bulgaricus 2038 chromosome": "Type II-A",
    "Psychromonas ingrahamii 37": "Type I-E",
    "Xanthomonas oryzae pv. oryzae PXO99A": "Type I-C",
    "Campylobacter hominis ATCC BAA-381": "Type I-B",
    "Lactobacillus salivarius UCC118": "Type II-A",
    "Ramlibacter tataouinensis TTB310 chromosome": "Type I-C",
    "Bifidobacterium adolescentis ATCC 15703": "Type I-C",
    "Pseudomonas stutzeri A1501": "Type I-C",
    "Clostridium novyi NT": "Type I-B",
    "Pyrobaculum islandicum DSM 4184": "Type III-A",
    "Streptococcus sanguinis SK36": "Type III-A",
    "Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842": "Type I-E",
    "Granulibacter bethesdensis CGDNIH1": "Type I-E",
    "Thermococcus barophilus MP chromosome": "Type I-A",
    "Desulfovibrio vulgaris subsp. vulgaris DP4 plasmid pDVUL01": "Type I-C",
    "Listeria monocytogenes Finland 1998 chromosome": "Type I-B",
    "Listeria monocytogenes 10403S chromosome": "Type II-A",
    "Mycobacterium tuberculosis str. Haarlem": "Type III-A",
    "Leptothrix cholodnii SP-6": "Type I-C",
    "Cyanothece sp. PCC 7425 plasmid pP742501": "Type III-B",
    "Thioalkalivibrio sp. K90mix chromosome": "Type I-F",
    "Delftia acidovorans SPH-1": "Type I-F",
    "Geobacter lovleyi SZ": "Type I-E",
    "Shewanella baltica OS195": "Type I-F",
    "Pseudomonas mendocina ymp": "Type I-E",
    "Enterobacter sp. 638": "Type I-F",
    "Flavobacterium psychrophilum JIP02/86 complete genome": "Type II-C",
    "Methanococcus maripaludis C5": "Type I-B",
    "Parvibaculum lavamentivorans DS-1": "Type II-C",
    "Shewanella baltica OS185": "Type I-F",
    "Petrotoga mobilis SJ95": "Type I-B",
    "Lactobacillus helveticus DPC 4571": "Type I-C",
    "Natrinema sp. J7-2 chromosome": "Type I-B",
    "Xenorhabdus nematophila ATCC 19061": "Type I-E",
    "Escherichia coli SE11": "Type I-E",
    "Methanocorpusculum labreanum Z": "Type I-C",
    "Cronobacter turicensis z3032 complete genome": "Type I-E",
    "Actinobacillus pleuropneumoniae L20": "Type I-F",
    "Mycobacterium tuberculosis H37Ra": "Type III-A",
    "Methanobrevibacter smithii ATCC 35061": "Type I-B",
    "Salmonella enterica subsp. enterica serovar Newport str. SL254 chromosome": "Type I-E",
    "Clostridium kluyveri DSM 555": "Type I-B",
    "Actinobacillus pleuropneumoniae serovar 3 str. JL03": "Type I-F",
    "Desulfatibacillum alkenivorans AK-01": "Type I-E",
    "Escherichia coli SMS-3-5": "Type I-E",
    "Bifidobacterium animalis subsp. lactis AD011": "Type I-U",
    "Mycobacterium tuberculosis CCDC5079 chromosome": "Type III-A",
    "Mycobacterium tuberculosis CCDC5180": "Type III-A",
    "Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome": "Type I-E",
    "Stackebrandtia nassauensis DSM 44728 chromosome": "Type I-C",
    "Anaeromyxobacter sp. K": "Type I-E",
    "Microcystis aeruginosa NIES-843": "Type I-D",
    "Kitasatospora setae KM-6054": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Heidelberg str. SL476": "Type I-E",
    "Anaeromyxobacter dehalogenans 2CP-1": "Type I-E",
    "Streptomyces griseus subsp. griseus NBRC 13350": "Type I-E",
    "Erwinia tasmaniensis Et1/99": "Type I-F",
    "Streptococcus gordonii str. Challis substr. CH1": "Type II-C",
    "Thermobispora bispora DSM 43833 chromosome": "Type I-E",
    "Fusobacterium nucleatum subsp. vincentii 3_1_36A2": "Type II-A",
    "Thermomonospora curvata DSM 43183": "Type I-E",
    "Mycobacterium tuberculosis KZN 4207 chromosome": "Type III-A",
    "Mycobacterium tuberculosis KZN 1435": "Type III-A",
    "Mycobacterium tuberculosis KZN 605 chromosome": "Type III-A",
    "Nakamurella multipartita DSM 44233": "Type I-E",
    "Catenulispora acidiphila DSM 44928": "Type I-E",
    "Sphaerobacter thermophilus DSM 20745 chromosome 2": "Type I-E",
    "Veillonella parvula DSM 2008": "Type III-A",
    "Eggerthella lenta DSM 2243": "Type I-C",
    "Acinetobacter baumannii AB0057": "Type I-F",
    "Escherichia coli ATCC 8739": "Type I-E",
    "Halomicrobium mukohataei DSM 12286": "Type I-B",
    "Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1": "Type II-A",
    "Candidatus Puniceispirillum marinum IMCC1322 chromosome": "Type II-C",
    "Anoxybacillus flavithermus WK1": "Type I-B",
    "Cellvibrio japonicus Ueda107": "Type I-C",
    "Yersinia pseudotuberculosis YPIII": "Type I-F",
    "Yersinia pseudotuberculosis PB1/+": "Type I-F",
    "Spirosoma linguale DSM 74": "Type I-B",
    "Corynebacterium urealyticum DSM 7109": "Type I-E",
    "Acinetobacter baumannii AYE": "Type I-F",
    "Caldisericum exile AZM16c01": "Type I-B",
    "Escherichia coli str. K-12 substr. MG1655": "Type I-E",
    "Lactobacillus buchneri NRRL B-30929 chromosome": "Type II-A",
    "Chlorobaculum parvum NCIB 8327": "Type III-A",
    "Streptobacillus moniliformis DSM 12112": "Type II-C",
    "Halorhabdus utahensis DSM 12940": "Type I-B",
    "Haloferax mediterranei ATCC 33500": "Type I-B",
    "Thermococcus onnurineus NA1": "Type III-D",
    "Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774": "Type I-E",
    "Gardnerella vaginalis ATCC 14019 chromosome": "Type I-E",
    "Acidimicrobium ferrooxidans DSM 10331": "Type I-E",
    "Brachyspira murdochii DSM 12563 chromosome": "Type I-B",
    "Pirellula staleyi DSM 6068": "Type III-D",
    "Escherichia coli DH1": "Type I-E",
    "Actinobacillus pleuropneumoniae serovar 7 str. AP76": "Type I-F",
    "Lactobacillus paracasei subsp. paracasei 8700:2": "Type II-A",
    "Treponema azotonutricium ZAS-9 chromosome": "Type III-B",
    "Hydrogenobaculum sp. HO": "Type I-B",
    "Hydrogenobaculum sp. SN": "Type I-B",
    "Corynebacterium aurimucosum ATCC 700975": "Type I-E",
    "Mobiluncus curtisii ATCC 43063 chromosome": "Type I-E",
    "Erwinia amylovora": "Type I-E",
    "Bifidobacterium animalis subsp. lactis BB-12 chromosome": "Type I-U",
    "Listeria monocytogenes HCC23": "Type I-B",
    "Halothiobacillus neapolitanus c2": "Type I-C",
    "Bifidobacterium animalis subsp. lactis DSM 10140": "Type I-U",
    "Acinetobacter baumannii AB307-0294": "Type I-F",
    "Rhodobacter sphaeroides KD131 chromosome 1": "Type I-C",
    "Listeria monocytogenes L99": "Type I-B",
    "Lactobacillus rhamnosus GG": "Type II-A",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. D23580": "Type I-E",
    "Acidaminococcus intestini RyC-MR95 chromosome": "Type II-A",
    "Allochromatium vinosum DSM 180 chromosome": "Type I-E",
    "Ilyobacter polytropus DSM 2926 plasmid pILYOP01": "Type II-C",
    "Aminobacterium colombiense DSM 12261 chromosome": "Type I-A",
    "Desulfovibrio vulgaris RCH1 plasmid pDEVAL01": "Type I-C",
    "Bifidobacterium animalis subsp. lactis V9 chromosome": "Type I-U",
    "Desulfobulbus propionicus DSM 2032 chromosome": "Type I-C",
    "Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome": "Type I-E",
    "Bifidobacterium animalis subsp. lactis Bl-04": "Type I-U",
    "Geobacillus sp. Y4.1MC1 chromosome": "Type I-B",
    "Clostridium kluyveri NBRC 12016": "Type I-B",
    "Ignisphaera aggregans DSM 17230 chromosome": "Type I-A",
    "Escherichia coli IAI1": "Type I-E",
    "Escherichia fergusonii ATCC 35469": "Type I-E",
    "Roseburia hominis A2-183 chromosome": "Type I-C",
    "Escherichia coli ED1a": "Type I-F",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chromosome": "Type I-E",
    "Desulfurivibrio alkaliphilus AHT2 chromosome": "Type I-F",
    "Ferroglobus placidus DSM 10642 chromosome": "Type I-A",
    "Cellulomonas fimi ATCC 484 chromosome": "Type I-E",
    "Acidaminococcus fermentans DSM 20731": "Type I-C",
    "Escherichia coli LF82": "Type I-F",
    "Thermococcus gammatolerans EJ3": "Type I-A",
    "Tolumonas auensis DSM 9187": "Type I-F",
    "Alicycliphilus denitrificans BC chromosome": "Type II-C",
    "Alicycliphilus denitrificans K601 chromosome": "Type II-C",
    "Neisseria meningitidis 8013": "Type II-C",
    "Thermococcus sibiricus MM 739": "Type I-B",
    "Hydrogenobacter thermophilus TK-6": "Type I-B",
    "Zymomonas mobilis subsp. mobilis NCIB 11163": "Type I-F",
    "Zymomonas mobilis subsp. mobilis NCIB 11163 plasmid pZA1002": "Type I-C",
    "Sphingobium sp. SYK-6": "Type I-C",
    "Dehalococcoides sp. GT chromosome": "Type I-E",
    "Olsenella uli DSM 7084 chromosome": "Type II-A",
    "Thermosphaera aggregans DSM 11486 chromosome": "Type I-A",
    "Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011": "Type I-E",
    "Nostoc punctiforme PCC 73102": "Type I-D",
    "Deferribacter desulfuricans SSM1": "Type I-B",
    "Deferribacter desulfuricans SSM1 megaplasmid pDF308": "Type I-B",
    "Klebsiella variicola At-22 chromosome": "Type I-E",
    "Desulfovibrio desulfuricans ND132 chromosome": "Type I-C",
    "Arcanobacterium haemolyticum DSM 20595 chromosome": "Type I-E",
    "Thermaerobacter marianensis DSM 12885 chromosome": "Type I-B",
    "Clostridium difficile R20291": "Type I-B",
    "Desulfosporosinus acidiphilus SJ4 chromosome": "Type I-C",
    "Desulfobacula toluolica Tol2": "Type I-B",
    "Rhodopseudomonas palustris DX-1 chromosome": "Type I-C",
    "Mycobacterium tuberculosis str. Erdman = ATCC 35801 DNA": "Type III-A",
    "Halanaerobium sp. 'sapolanicus' chromosome": "Type I-B",
    "Gordonibacter pamelaeae 7-10-1-b draft genome.": "Type II-A",
    "Corynebacterium resistens DSM 45100 chromosome": "Type I-E",
    "Ethanoligenens harbinense YUAN-3 chromosome": "Type I-C",
    "Geobacter sulfurreducens KN400 chromosome": "Type I-E",
    "Spirochaeta thermophila DSM 6192 chromosome": "Type I-C",
    "Acidilobus saccharovorans 345-15 chromosome": "Type III-B",
    "Bacillus clausii KSM-K16": "Type I-C",
    "Methanosalsum zhilinae DSM 4017 chromosome": "Type I-E",
    "Sulfobacillus acidophilus DSM 10332 chromosome": "Type I-B",
    "Rothia mucilaginosa DY-18": "Type I-U",
    "Geobacillus sp. C56-T3 chromosome": "Type I-B",
    "Archaeoglobus veneficus SNP6 chromosome": "Type I-B",
    "Shewanella baltica OS678 chromosome": "Type I-F",
    "Paludibacter propionicigenes WB4 chromosome": "Type IV",
    "Thermoanaerobacter wiegelii Rt8.B1 chromosome": "Type I-B",
    "Ruminococcus albus 7 chromosome": "Type I-C",
    "Corynebacterium diphtheriae 31A chromosome": "Type II-C",
    "Corynebacterium diphtheriae PW8 chromosome": "Type I-E",
    "Corynebacterium diphtheriae HC03 chromosome": "Type I-E",
    "Niastella koreensis GR20-10 chromosome": "Type I-B",
    "Bifidobacterium animalis subsp. animalis ATCC 25527 chromosome": "Type I-E",
    "Mycobacterium tuberculosis CTRI-2 chromosome": "Type III-A",
    "Odoribacter splanchnicus DSM 20712 chromosome": "Type I-B",
    "Lactobacillus salivarius CECT 5713 chromosome": "Type II-A",
    "Amycolatopsis mediterranei S699 chromosome": "Type I-E",
    "Erwinia amylovora ATCC 49946": "Type I-E",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. T000240": "Type I-E",
    "Delftia sp. Cs1-4 chromosome": "Type I-F",
    "Bifidobacterium animalis subsp. lactis Bi-07 chromosome": "Type I-U",
    "Thermus scotoductus SA-01 chromosome": "Type I-E",
    "Taylorella equigenitalis ATCC 35865 chromosome": "Type I-C",
    "Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome": "Type I-F",
    "Deinococcus gobiensis I-0 plasmid P5": "Type I-E",
    "Pseudogulbenkiania sp. NH8B": "Type I-E",
    "Halobacteroides halobius DSM 5150": "Type I-A",
    "Lactobacillus crispatus ST1": "Type I-E",
    "Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1": "Type I-U",
    "Methylophaga nitratireducenticrescens strain JAM1": "Type I-F",
    "Methylophaga sp. JAM7 chromosome": "Type I-F",
    "Cyanobacterium aponinum PCC 10605 chromosome": "Type III-A",
    "Clostridium sp. BNL1100 chromosome": "Type I-C",
    "Fluviicola taffensis DSM 16823 chromosome": "Type II-C",
    "Halophilic archaeon DL31 chromosome": "Type I-D",
    "Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02": "Type III-B",
    "Streptococcus parasanguinis ATCC 15912 chromosome": "Type I-C",
    "Aromatoleum aromaticum EbN1": "Type I-C",
    "Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201": "Type III-A",
    "Rothia dentocariosa ATCC 17931 chromosome": "Type I-U",
    "Desulfurococcus mucosus DSM 2162 chromosome": "Type I-A",
    "Thiocystis violascens DSM 198 chromosome": "Type I-E",
    "Prevotella denticola F0289 chromosome": "Type II-C",
    "Lactobacillus fermentum F-6": "Type I-E",
    "Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome": "Type I-E",
    "Lactobacillus helveticus H10 chromosome": "Type I-C",
    "Calditerrivibrio nitroreducens DSM 19672 chromosome": "Type III-A",
    "Desulfosporosinus orientis DSM 765 chromosome": "Type I-C",
    "Natronobacterium gregoryi SP2 chromosome": "Type I-B",
    "Thermus thermophilus JL-18 plasmid pTTJL1801": "Type I-E",
    "Mycobacterium tuberculosis CDC1551": "Type III-A",
    "Mycobacterium tuberculosis H37Rv": "Type III-A",
    "Thauera sp. MZ1T": "Type I-E",
    "Ralstonia solanacearum CFBP2957": "Type I-E",
    "Bacteroides fragilis 638R": "Type II-C",
    "Streptococcus anginosus C1051": "Type II-C",
    "Weeksella virosa DSM 16922 chromosome": "Type II-C",
    "Belliella baltica DSM 15883 chromosome": "Type II-C",
    "Bifidobacterium breve ACS-071-V-Sch8b chromosome": "Type I-C",
    "Methanomethylovorans hollandica DSM 15978": "Type III-C",
    "Treponema succinifaciens DSM 2489 chromosome": "Type III-A",
    "Spirochaeta thermophila DSM 6578 chromosome": "Type I-D",
    "Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1": "Type I-E",
    "Listeria monocytogenes SLCC2540": "Type II-A",
    "Porphyromonas asaccharolytica DSM 20707 chromosome": "Type I-C",
    "Lactobacillus helveticus R0052 chromosome": "Type I-C",
    "Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough megaplasmid": "Type I-C",
    "Listeria monocytogenes SLCC5850": "Type II-A",
    "Desulfovibrio vulgaris str. 'Miyazaki F'": "Type I-C",
    "Bifidobacterium bifidum S17 chromosome": "Type II-A",
    "Spirochaeta africana DSM 8902 chromosome": "Type I-F",
    "Propionibacterium freudenreichii subsp. shermanii isolate PFREUDJS1 genome assembly": "Type I-U",
    "Methanoculleus sp. MAB1 isolate Methanoculleus sp MAB1 genome assembly": "Type I-U",
    "Lactobacillus rhamnosus strain BPL5 genome assembly": "Type II-A",
    "Neisseria weaveri strain NCTC13585 genome assembly": "Type I-C",
    "Xanthomonas translucens pv. translucens DSM 18974 isolate peng1 genome assembly": "Type I-C",
    "Petrimonas mucosa isolate ING2-E5A genome assembly": "Type I-B",
    "Clostridium chauvoei JF4335 genome assembly": "Type I-B",
    "Treponema brennaborense DSM 12168 chromosome": "Type I-C",
    "Prevotella dentalis DSM 3688 chromosome 2": "Type I-C",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 chromosome": "Type I-E",
    "Lactobacillus johnsonii DPC 6026 chromosome": "Type II-A",
    "Selenomonas ruminantium subsp. lactilytica TAM6421": "Type I-F",
    "Clostridium botulinum BKT015925 plasmid p1BKT015925": "Type I-B",
    "Alcanivorax dieselolei B5 chromosome": "Type I-F",
    "Clostridium saccharoperbutylacetonicum N1-4(HMT)": "Type I-B",
    "Acetobacterium woodii DSM 1030 chromosome": "Type I-B",
    "Neisseria meningitidis M01-240355 chromosome": "Type II-C",
    "Pseudomonas aeruginosa M18 chromosome": "Type I-F",
    "Bacillus coagulans 2-6 chromosome": "Type I-B",
    "Neisseria meningitidis WUE 2594": "Type II-C",
    "Arcobacter sp. L": "Type I-B",
    "Cronobacter sakazakii Sp291": "Type I-E",
    "Streptococcus gallolyticus subsp. gallolyticus ATCC 43143": "Type II-A",
    "Streptococcus pasteurianus ATCC 43144": "Type II-C",
    "Rubrivivax gelatinosus IL144": "Type I-E",
    "Staphylococcus pseudintermedius ED99 chromosome": "Type II-C",
    "Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chromosome": "Type I-E",
    "Xanthomonas campestris pv. raphani 756C chromosome": "Type I-F",
    "Polymorphum gilvum SL003B-26A1 chromosome": "Type I-E"
}

# Characters that we will allow in our sequences.
# Some K, Y, Ms and others kept popping up.
goodChars = set('ATGC\n')

others = 0
cata = 0
for l in iFile:
    # if l[0] is the '>' character, then it's just a label, so we'll hold onto that.
    if l[0] == '>':
        label = l.split(' ', 1)[1].split(',', 1)[0]
        try:
            # Test if label has a type
            label = types[label]
            cata += 1
        except:
            # If not, give label 'Other'
            others += 1
            label = 'Other'
    else:
        # If l[0] is a new line character only, then we know that there is a space, and the CRISPR sequence is done
        # and we are about to roll over into the next CRISPR (next line will be a label anyways)
        if l[0] == '\n':
            # Checks if the sequence only contains ATGCs.
            # If the letters check out, save the label and the CRISPR to their respective files.
            if set(CRISPR) <= goodChars:

                # If the CRISPR is actually longer than MIN_SIZE, we'll take it.
                # We want to make sure there is enough info in there to eliminate noise.
                if len(CRISPR) >= MIN_SIZE:
                    labelFile.write(label + '\n')
                    oFile.write(CRISPR + '\n')

            CRISPR = ''

        # OK, here we just have part (or possibly all?) of a CRISPR sequence
        else:
            CRISPR = CRISPR + l.strip()


iFile.close()
oFile.close()
labelFile.close()

# Prints amounts to console
cata = cata - others
print(f'{cata} put in catagories.')
print(f'{others} Put in other catagory.')
