from files import *
from obo_parser import *

import re

class GoLoader:


    @staticmethod
    def get_data():
        path = "tmp";
        S3File("mod-datadumps/data", "go.obo", path).download()
        parsed_line = parseGOOBO(path + "/go.obo")
        dict_to_return = {}
        for line in parsed_line: # Convert parsed obo term into a schema-friendly AGR dictionary.
            go_id = line['id']
            dict_to_return[go_id] = {
                'go_genes': [],
                'go_species': [],
                'name': line['name'],
                'description': line['def'],
                'go_type': line['namespace'],
                'go_synonyms': line.get('synonym'),
                'name_key': line['name'],
                'id': go_id,
                'href': 'http://amigo.geneontology.org/amigo/term/' + line['id'],
                'category': 'go'
            }

        return dict_to_return

d82aafc6904e178d349cb4868392734d83290a52
<mask token>

<mask token>


class GoLoader:
    <mask token>

<mask token>


class GoLoader:

    @staticmethod
    def get_data():
        path = 'tmp'
        S3File('mod-datadumps/data', 'go.obo', path).download()
        parsed_line = parseGOOBO(path + '/go.obo')
        dict_to_return = {}
        for line in parsed_line:
            go_id = line['id']
            dict_to_return[go_id] = {'go_genes': [], 'go_species': [],
                'name': line['name'], 'description': line['def'], 'go_type':
                line['namespace'], 'go_synonyms': line.get('synonym'),
                'name_key': line['name'], 'id': go_id, 'href': 
                'http://amigo.geneontology.org/amigo/term/' + line['id'],
                'category': 'go'}
        return dict_to_return

from files import *
from obo_parser import *
import re


class GoLoader:

    @staticmethod
    def get_data():
        path = 'tmp'
        S3File('mod-datadumps/data', 'go.obo', path).download()
        parsed_line = parseGOOBO(path + '/go.obo')
        dict_to_return = {}
        for line in parsed_line:
            go_id = line['id']
            dict_to_return[go_id] = {'go_genes': [], 'go_species': [],
                'name': line['name'], 'description': line['def'], 'go_type':
                line['namespace'], 'go_synonyms': line.get('synonym'),
                'name_key': line['name'], 'id': go_id, 'href': 
                'http://amigo.geneontology.org/amigo/term/' + line['id'],
                'category': 'go'}
        return dict_to_return

from files import *
from obo_parser import *

import re

class GoLoader:


    @staticmethod
    def get_data():
        path = "tmp";
        S3File("mod-datadumps/data", "go.obo", path).download()
        parsed_line = parseGOOBO(path + "/go.obo")
        dict_to_return = {}
        for line in parsed_line: # Convert parsed obo term into a schema-friendly AGR dictionary.
            go_id = line['id']
            dict_to_return[go_id] = {
                'go_genes': [],
                'go_species': [],
                'name': line['name'],
                'description': line['def'],
                'go_type': line['namespace'],
                'go_synonyms': line.get('synonym'),
                'name_key': line['name'],
                'id': go_id,
                'href': 'http://amigo.geneontology.org/amigo/term/' + line['id'],
                'category': 'go'
            }

        return dict_to_return
